Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130600 Sequence: fasta or formatted (594aa) NCBI GI: 169171432
Description:

PREDICTED: similar to hCG2014367

Referenced in:

SOX Family

Other entries for this name:
alt prot [594aa] PREDICTED: hypothetical protein LOC100130600
alt prot [594aa] PREDICTED: similar to hCG2014367
alt prot [594aa] PREDICTED: similar to hCG2014367
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         55           2
 C cysteine            2.9         17           1
 D aspartate           3.7         22           1
 E glutamate           4.4         26           2
 F phenylalanine       2.5         15           1
 G glycine             8.8         52           2
 H histidine           3.5         21           1
 I isoleucine          0.8          5           1
 K lysine              3.5         21           1
 L leucine             9.3         55           3
 M methionine          2.4         14           1
 N asparagine          2.4         14           1
 P proline             9.1         54           2
 Q glutamine           5.4         32           2
 R arginine            4.9         29           2
 S serine             12.1         72           3
 T threonine           5.9         35           2
 V valine              4.7         28           2
 W tryptophan          2.0         12           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2014367 
LOC100130600          0.998   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.998   PREDICTED: similar to hCG2014367 
LOC100130600          0.996   PREDICTED: similar to hCG2014367 
LOC648262             0.906   PREDICTED: hypothetical protein 
LOC100288667          0.898   PREDICTED: hypothetical protein XP_002344293 
LOC648262             0.393   PREDICTED: similar to hCG1996386 
LOC648262             0.393   PREDICTED: similar to hCG1996386 
LOC100289067          0.310   PREDICTED: hypothetical protein XP_002342619 
CIC                   0.162   capicua homolog 
LOC442676             0.124   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.124   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.124   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.122   PREDICTED: hypothetical protein LOC442676 
KIAA1602              0.012   hypothetical protein LOC57701 
BBX                   0.012   HMG-BOX transcription factor BBX isoform 1 
BBX                   0.012   HMG-BOX transcription factor BBX isoform 2 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
FAM83H                0.010   FAM83H 
ZC3H4                 0.009   zinc finger CCCH-type containing 4 
ERF                   0.008   Ets2 repressor factor 
MUC5AC                0.008   mucin 5AC 
MUC5B                 0.008   mucin 5, subtype B, tracheobronchial 
TCF7L2                0.007   transcription factor 7-like 2 isoform 1 
TCF7L2                0.007   transcription factor 7-like 2 isoform 2 
TCF7L2                0.007   transcription factor 7-like 2 isoform 6 
TCF7L2                0.007   transcription factor 7-like 2 isoform 5 
TCF7L2                0.007   transcription factor 7-like 2 isoform 4 
TCF7L2                0.007   transcription factor 7-like 2 isoform 3 
BMP6                  0.007   bone morphogenetic protein 6 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press