Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289067 Sequence: fasta or formatted (351aa) NCBI GI: 239742769
Description:

PREDICTED: hypothetical protein XP_002342619

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         28           2
 C cysteine            1.1          4           1
 D aspartate           3.1         11           1
 E glutamate           4.0         14           1
 F phenylalanine       2.6          9           1
 G glycine             8.0         28           2
 H histidine           4.6         16           1
 I isoleucine          0.9          3           1
 K lysine              3.1         11           1
 L leucine             7.7         27           2
 M methionine          2.0          7           1
 N asparagine          3.4         12           2
 P proline            12.3         43           3
 Q glutamine           7.7         27           2
 R arginine            5.7         20           1
 S serine             10.5         37           3
 T threonine           5.1         18           1
 V valine              4.6         16           2
 W tryptophan          4.0         14           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342619 
LOC100288667          0.599   PREDICTED: hypothetical protein XP_002344293 
LOC648262             0.542   PREDICTED: hypothetical protein 
LOC100130600          0.515   PREDICTED: similar to hCG2014367 
LOC100130600          0.515   PREDICTED: similar to hCG2014367 
LOC100130600          0.515   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.515   PREDICTED: similar to hCG2014367 
LOC648262             0.433   PREDICTED: similar to hCG1996386 
LOC648262             0.433   PREDICTED: similar to hCG1996386 
LOC442676             0.259   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.259   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.259   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.256   PREDICTED: hypothetical protein LOC442676 
CIC                   0.236   capicua homolog 
BBX                   0.022   HMG-BOX transcription factor BBX isoform 1 
BBX                   0.022   HMG-BOX transcription factor BBX isoform 2 
WT1                   0.021   Wilms tumor 1 isoform D 
WT1                   0.021   Wilms tumor 1 isoform C 
WT1                   0.021   Wilms tumor 1 isoform B 
WT1                   0.021   Wilms tumor 1 isoform A 
FMN2                  0.021   formin 2 
C9orf86               0.021   Rab-like GTP-binding protein 1 isoform 2 
WAS                   0.019   Wiskott-Aldrich syndrome protein 
NACAD                 0.018   NAC alpha domain containing 
NACAD                 0.018   PREDICTED: NAC alpha domain containing 
NACAD                 0.018   PREDICTED: NAC alpha domain containing 
NACAD                 0.018   PREDICTED: NAC alpha domain containing 
NACAD                 0.018   PREDICTED: NAC alpha domain containing 
WASL                  0.016   Wiskott-Aldrich syndrome gene-like protein 
RGL4                  0.016   ral guanine nucleotide dissociation stimulator-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press