Guide to the Human Genome
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Name: LOC648262 Sequence: fasta or formatted (441aa) NCBI GI: 169162775
Description:

PREDICTED: similar to hCG1996386

Referenced in:

SOX Family

Other entries for this name:
alt mRNA [441aa] PREDICTED: similar to hCG1996386
alt prot [811aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         34           2
 C cysteine            2.3         10           1
 D aspartate           4.1         18           1
 E glutamate           4.8         21           3
 F phenylalanine       2.3         10           1
 G glycine             7.3         32           2
 H histidine           3.9         17           1
 I isoleucine          1.8          8           1
 K lysine              3.9         17           1
 L leucine             9.8         43           3
 M methionine          3.4         15           2
 N asparagine          2.5         11           2
 P proline            10.4         46           2
 Q glutamine           5.4         24           2
 R arginine            6.8         30           2
 S serine             11.6         51           3
 T threonine           5.0         22           2
 V valine              3.4         15           1
 W tryptophan          2.3         10           2
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1996386 
LOC648262             1.000   PREDICTED: similar to hCG1996386 
LOC648262             0.600   PREDICTED: hypothetical protein 
LOC100288667          0.540   PREDICTED: hypothetical protein XP_002344293 
LOC100130600          0.534   PREDICTED: similar to hCG2014367 
LOC100130600          0.534   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.534   PREDICTED: similar to hCG2014367 
LOC100130600          0.531   PREDICTED: similar to hCG2014367 
LOC100289067          0.352   PREDICTED: hypothetical protein XP_002342619 
LOC442676             0.261   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.261   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.261   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.259   PREDICTED: hypothetical protein LOC442676 
CIC                   0.106   capicua homolog 
BBX                   0.018   HMG-BOX transcription factor BBX isoform 1 
BBX                   0.018   HMG-BOX transcription factor BBX isoform 2 
KIAA1191              0.009   hypothetical protein LOC57179 isoform a 
KIAA1191              0.009   hypothetical protein LOC57179 isoform b 
KIAA1191              0.009   hypothetical protein LOC57179 isoform a 
SPRY1                 0.009   sprouty homolog 1, antagonist of FGF signaling [Homo...
SPRY1                 0.009   sprouty homolog 1, antagonist of FGF signaling [Homo...
MLL3                  0.009   myeloid/lymphoid or mixed-lineage leukemia 3 
SOX13                 0.009   SRY-box 13 
KDM1                  0.009   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.009   amine oxidase (flavin containing) domain 2 isoform b...
SALL2                 0.009   sal-like 2 
TBC1D12               0.009   TBC1 domain family, member 12 
DACH2                 0.009   dachshund 2 isoform c 
DACH2                 0.009   dachshund 2 isoform b 
DACH2                 0.009   dachshund 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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