BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] (110 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59 gi|113417273 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59 gi|113416809 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59 gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 37 0.004 gi|21389577 hypothetical protein LOC146705 [Homo sapiens] 37 0.004 gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.010 gi|153070260 myristoylated alanine-rich protein kinase C substra... 35 0.010 gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 35 0.010 gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 35 0.013 gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 35 0.013 gi|117938768 GNAS complex locus alex [Homo sapiens] 35 0.017 gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 35 0.017 gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.017 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.022 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.022 gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 34 0.022 gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 34 0.022 gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.022 gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 34 0.022 gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 34 0.022 gi|28557729 hypothetical protein LOC283687 [Homo sapiens] 34 0.022 gi|239582765 ral guanine nucleotide dissociation stimulator-like... 34 0.029 gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 34 0.029 gi|41281612 zinc finger protein 828 [Homo sapiens] 34 0.029 gi|182507165 thymus expressed gene 3-like [Homo sapiens] 34 0.029 gi|122937424 one cut homeobox 3 [Homo sapiens] 34 0.029 gi|38348332 killer cell lectin-like receptor subfamily G, member... 34 0.029 gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.029 gi|30795231 brain abundant, membrane attached signal protein 1 [... 33 0.038 gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 33 0.038 >gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] Length = 110 Score = 223 bits (568), Expect = 3e-59 Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 >gi|113417273 PREDICTED: hypothetical protein [Homo sapiens] Length = 110 Score = 223 bits (568), Expect = 3e-59 Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 >gi|113416809 PREDICTED: hypothetical protein [Homo sapiens] Length = 110 Score = 223 bits (568), Expect = 3e-59 Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60 Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110 >gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapiens] Length = 366 Score = 36.6 bits (83), Expect = 0.004 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%) Query: 21 PGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS--------------VEP 66 PGP+ S G P+ GR RS PS PPG HS + S V+ Sbjct: 11 PGPITSDPGPDPAPRGGRARSH---PSPPPGSHSLRYFYTAVSRPGLGEPRFISVGYVDD 67 Query: 67 QAWVRDERDAALARGRPSAPKTREQAP 93 +VR + D+A R P AP ++ P Sbjct: 68 TQFVRFDSDSANPREEPRAPWMEQEGP 94 >gi|21389577 hypothetical protein LOC146705 [Homo sapiens] Length = 525 Score = 36.6 bits (83), Expect = 0.004 Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 20/117 (17%) Query: 10 GARAPA-SASGEPGPLASLRGASPSL--ELGRPRSEV------------KAPSGPPGLHS 54 G +PA S EPGP A+L G S L + P S+V ++P+ G+ S Sbjct: 353 GQLSPARGTSAEPGPTAALPGPSDLLTDAVPLPGSQVFLQPLSSTPVSSRSPAPSSGMPS 412 Query: 55 R--SSPAPSASVEPQAWVRDERDAALA---RGRPSAPKTREQAPGEKPLEVSWSRES 106 +P P AS P E +A LA R RP +P P +WSR+S Sbjct: 413 SPVPTPPPDASPIPAPGDPSEAEARLAESRRWRPERIPGGTDSPKRGPSSCAWSRDS 469 >gi|156071470 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 [Homo sapiens] Length = 889 Score = 35.4 bits (80), Expect = 0.010 Identities = 22/72 (30%), Positives = 30/72 (41%) Query: 7 RAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEP 66 R A P+ G PGP AS R AS S P +A + P +SP + ++P Sbjct: 818 RPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGGLDP 877 Query: 67 QAWVRDERDAAL 78 Q R + L Sbjct: 878 QDSARSRLSSNL 889 Score = 26.2 bits (56), Expect = 6.0 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 13 APASASGEPGPLASLRGASPSLEL-------GRPRSEVKAPSGPPGLHSRSSPAPSASVE 65 APA+AS P P AS GA S G P + + P+ P SR+S SAS Sbjct: 766 APAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSAS-- 823 Query: 66 PQAWVRDERDAALARGRPSAPKTREQAP 93 Q + A RP++ T P Sbjct: 824 -QPSLPHGAPGPAASTRPASSSTPRLGP 850 Score = 25.8 bits (55), Expect = 7.8 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 34 LELGRPRSEVKAPSGP-PGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQA 92 L LG PR + P GP P S P P++ A R R + G P+AP Sbjct: 750 LALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYG-GLPAAPLAGPAL 808 Query: 93 PGEK 96 P + Sbjct: 809 PARR 812 >gi|153070260 myristoylated alanine-rich protein kinase C substrate [Homo sapiens] Length = 332 Score = 35.4 bits (80), Expect = 0.010 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%) Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELG--------------RPRSEVKAPS 47 + E G+ E A A+A+ E G + + A+P E +P+ AP Sbjct: 188 AAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPE 247 Query: 48 GPPGL-HSRSSPAPSASVEPQAWVRDERDAAL---ARGRPSAPKTREQAPGEKP 97 PP ++++ PS E +A AA + P AP +E AP E+P Sbjct: 248 KPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEP 301 Score = 33.9 bits (76), Expect = 0.029 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS 63 E +A G+ APA+ EP S + + E G P + AP + +PA + Sbjct: 56 EELQANGS-APAADKEEPAAAGSGAASPSAAEKGEPAAAA-APEAGASPVEKEAPAEGEA 113 Query: 64 VEPQAWVRDERDAALARGRPSAPKTREQA 92 EP + E +AA A S+PK + A Sbjct: 114 AEPGSPTAAEGEAASAASSTSSPKAEDGA 142 Score = 29.3 bits (64), Expect = 0.71 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 7 RAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEP 66 + G +PA+A G++P+ + P + A SG + P+A+ P Sbjct: 40 KVNGDASPAAAESGAKEELQANGSAPAADKEEPAA---AGSGAASPSAAEKGEPAAAAAP 96 Query: 67 QAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESP 107 +A A A G + P + A GE S S SP Sbjct: 97 EAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAAS-STSSP 136 >gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] Length = 109 Score = 35.4 bits (80), Expect = 0.010 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 7 RAEGARAPA-SASGEPG-PLASLRGASPSLELGRPRSEVKAPSGPPG-LHSRSSPAPSAS 63 R EGA P+ SA G+P P RG GRPR + + P+G P R P S + Sbjct: 4 RGEGAGQPSTSAQGQPAAPAPQKRGR------GRPRKQQQEPTGEPSPKRPRGRPKGSKN 57 Query: 64 VEPQAWVRDERDAA---LARGRPS--APKTREQAPGEKPLEVSWSRES 106 P + + +A RGRP + ++ P ++ E + S+ES Sbjct: 58 KSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQES 105 >gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] Length = 1215 Score = 35.0 bits (79), Expect = 0.013 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 12 RAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGP-PGLHSRSSPAPSASVEPQAWV 70 RA A+ G GP +P++ GR ++ P PG S + +P+A V Sbjct: 108 RAGAAPRGPGGP-----ARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQPRAAV 162 Query: 71 RDERDAALARGRPSAPKTREQAPGEKP 97 R R AL RG + P E+ PG +P Sbjct: 163 RPRRGGALPRGTGAVP---ERGPGTEP 186 >gi|59853099 dynamin 1 isoform 1 [Homo sapiens] Length = 864 Score = 35.0 bits (79), Expect = 0.013 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPA-PS 61 G RG A G SA G P+ S GASP P+ + PPG+ SRS A PS Sbjct: 794 GSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPGVPSRSGQASPS 853 Query: 62 ASVEPQ 67 P+ Sbjct: 854 RPESPR 859 >gi|117938768 GNAS complex locus alex [Homo sapiens] Length = 626 Score = 34.7 bits (78), Expect = 0.017 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 21/118 (17%) Query: 10 GARAPASASGEPGPLASL----RGASPSLELGRPRSEVKAPS-GPPGL-------HSRSS 57 G++AP++A P L+ L R A+P PRS + AP G L SR + Sbjct: 214 GSQAPSAA--HPKRLSDLLLTSRAAAPGWRSPDPRSRLAAPPLGSTTLPSTWTAPQSRLT 271 Query: 58 PAPSASVEPQAWVRDERDAALARGR-----PSAPKTREQAP--GEKPLEVSWSRESPV 108 PS S EPQ ++RD L R + P P+ E+ P G PL + P+ Sbjct: 272 ARPSRSPEPQIRESEQRDPQLRRKQQRWKEPLMPRREEKYPLRGTDPLPPGQPQRIPL 329 >gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sapiens] Length = 2113 Score = 34.7 bits (78), Expect = 0.017 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 37 GRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAP 93 G PR E P GL SR S APSA W R ER A + P R P Sbjct: 5 GEPRREEPPPQPSAGLRSRESGAPSAG----GWERAERGRGAAARPATGPPPRRIGP 57 >gi|119508426 alpha 3 type IX collagen [Homo sapiens] Length = 684 Score = 34.7 bits (78), Expect = 0.017 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPA 59 GERG EG R P G PGP + A PS E G P + +G PGL + A Sbjct: 268 GERG-PEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKD--GQNGVPGLDGQKGEA 321 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 34.3 bits (77), Expect = 0.022 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 10 GARAPASASGEPGPLASLRGASPSLELGRPRSE-VKAPSGPPGLHSRSSPAPSASVEPQA 68 G PA G PG + + A P G + V+ GPPG + PA + + Q Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394 Query: 69 WVRDERDAALARGRPSAPKTR----EQAPGEKP 97 + A G P P R Q PG P Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427 Score = 33.1 bits (74), Expect = 0.049 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGR--PRSEVKAPSGPPGLHSRSSPA 59 SGE G A G++ A GEPGP+ P+ E G+ R E P+G PG Sbjct: 433 SGEPG-APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGE-PGPTGLPGPPGERGGP 490 Query: 60 PSASVEPQAWVRDERDAALARGRPSAPKTREQAPGE 95 S V + A RG P P + +PGE Sbjct: 491 GSRGFPGADGVAGPKGPAGERGSP-GPAGPKGSPGE 525 Score = 30.8 bits (68), Expect = 0.24 Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 18/108 (16%) Query: 2 SGERGRAEGARAPASASGEPGP--LASLRG--ASPSLELGRPRSEVKAPSGPPGLHSRSS 57 +GE+G + GA PA A G PGP +A RG P R + PSG PG S Sbjct: 931 AGEKG-SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG 989 Query: 58 PA----PSASVEPQAWVRDERDAALARGRPSAPKT-----REQAPGEK 96 + P + P ++ GR AP R+ +PG K Sbjct: 990 ASGERGPPGPMGPPGLAGPPGES----GREGAPGAEGSPGRDGSPGAK 1033 Score = 30.4 bits (67), Expect = 0.32 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 21/93 (22%) Query: 3 GERGRA-----EGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS 57 GE GR GA+ + G PGP P+ + GRP P GPPG ++ Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP-----GPPGPPGARGQAG 578 Query: 58 ----PAPSASVEPQAWVRDERDAALARGRPSAP 86 P P + E A RG P P Sbjct: 579 VMGFPGPKGAA-------GEPGKAGERGVPGPP 604 Score = 29.3 bits (64), Expect = 0.71 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSR-SSPAP 60 +G +G A G PA +G PGP+ ++ +P + R + +G PG R P P Sbjct: 832 AGAKGDA-GPPGPAGPAGPPGPIGNV--GAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888 Query: 61 SASVEP 66 S + P Sbjct: 889 SGNAGP 894 Score = 28.5 bits (62), Expect = 1.2 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Query: 2 SGERGRA--EGARAPASASGEPGPLASLRGASPSLELGRPRSE-------VKAPSGPPGL 52 SG G A GAR GEPGP A P G+P ++ K +GPPG Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP 843 Query: 53 HSRSSP 58 + P Sbjct: 844 AGPAGP 849 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSP 58 G +G A G+ P A+G PG + PS G P P GP G P Sbjct: 860 GAKG-ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP-----GPPGPAGKEGGKGP 909 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 34.3 bits (77), Expect = 0.022 Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 22/100 (22%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSR-SSPAPS 61 GERG +G P GEPGP L P P GPPG+ P P Sbjct: 661 GERGD-DGEVGPRGLPGEPGPRGLLGPKGP-----------PGPPGPPGVTGMDGQPGPK 708 Query: 62 ASVEPQAWVRDERDAALARGRPSA-----PKTREQAPGEK 96 +V PQ E +G P A P+ PGEK Sbjct: 709 GNVGPQG----EPGPPGQQGNPGAQGLPGPQGAIGPPGEK 744 Score = 29.6 bits (65), Expect = 0.54 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 3 GERGRA--EGARAPASASGEPGPLASLRGASPSLELG-RPRSEVKAPSGPPGLHSRSSPA 59 G+RG G R P +G+PGP + G P+ G R + + P+G PG P Sbjct: 910 GQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969 Query: 60 PSASVEPQAWVRDERDAALARGRPSAP 86 + R E G P P Sbjct: 970 GKDGLPGHPGQRGETGFQGKTGPPGPP 996 Score = 29.3 bits (64), Expect = 0.71 Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 18 SGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSP 58 +G GP+ S + + L + R ++ P+GP GL R P Sbjct: 532 AGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGP 572 Score = 27.7 bits (60), Expect = 2.1 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 5/43 (11%) Query: 9 EGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPG 51 EG P +G PG A P GRP P GPPG Sbjct: 1077 EGPPGPPGPAGSPGERGPAGAAGPIGIPGRP-----GPQGPPG 1114 Score = 26.6 bits (57), Expect = 4.6 Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 19/101 (18%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS--GPPGLHSRSSPAP 60 GERG +G P+ A+G PGP P G P V P GPPG P P Sbjct: 1306 GERGE-KGESGPSGAAGPPGPKGPPGDDGPK---GSP-GPVGFPGDPGPPG-----EPGP 1355 Query: 61 SASVEPQAWVRDERD-------AALARGRPSAPKTREQAPG 94 + P D+ + PS P + PG Sbjct: 1356 AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1396 Score = 26.6 bits (57), Expect = 4.6 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 14/95 (14%) Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSA 62 GE G A G P G+ G P+ E G PSGPPG R P P A Sbjct: 1351 GEPGPA-GQDGPPGDKGDDGEPGQTGSPGPTGEPG--------PSGPPG--KRGPPGP-A 1398 Query: 63 SVEPQAWVRDERDAALARGRP--SAPKTREQAPGE 95 E + + + A G P + P + APG+ Sbjct: 1399 GPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGK 1433 >gi|239749439 PREDICTED: similar to transcription factor 23 [Homo sapiens] Length = 167 Score = 34.3 bits (77), Expect = 0.022 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS---PAP 60 +RGR G+ P SAS EP PLA+ ++ RP P+GP G SRS PA Sbjct: 2 DRGRPAGS--PLSASAEPAPLAA------AIRDSRPGRTGPGPAGPGG-GSRSGSGRPAA 52 Query: 61 SASVEPQAWVRDERDA--ALARGRPSAP 86 + + ++ V+ R A L R PS P Sbjct: 53 ANAARERSRVQTLRHAFLELQRTLPSVP 80 >gi|239743573 PREDICTED: similar to transcription factor 23 [Homo sapiens] Length = 167 Score = 34.3 bits (77), Expect = 0.022 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS---PAP 60 +RGR G+ P SAS EP PLA+ ++ RP P+GP G SRS PA Sbjct: 2 DRGRPAGS--PLSASAEPAPLAA------AIRDSRPGRTGPGPAGPGG-GSRSGSGRPAA 52 Query: 61 SASVEPQAWVRDERDA--ALARGRPSAP 86 + + ++ V+ R A L R PS P Sbjct: 53 ANAARERSRVQTLRHAFLELQRTLPSVP 80 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 34.3 bits (77), Expect = 0.022 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 8 AEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS 63 A A PA SG+PGP A+ +P ++ P+ V+A PP + ++ P+++ Sbjct: 316 APAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA--APPAAQTLAASGPAST 369 Score = 28.9 bits (63), Expect = 0.93 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 12/100 (12%) Query: 6 GRAEGARAPASASGEPGPLASLRGASPS-----------LELGRPRSEVKAPSGPPGLHS 54 G+ G A + +G L S A+P+ L L +P + PP + + Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGA 246 Query: 55 RSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAPG 94 + PAP+A P A AA P AP T + PG Sbjct: 247 AAPPAPAAP-SPPAAPAPAAPAAAPPPPPPAPATLARPPG 285 >gi|39930511 collagen and calcium binding EGF domains 1 [Homo sapiens] Length = 406 Score = 34.3 bits (77), Expect = 0.022 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%) Query: 19 GEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAAL 78 G+PGP S+ PS +L + + P GPPG R + ER A Sbjct: 277 GQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGS------------KGERGAPG 324 Query: 79 ARGRPSAP 86 RG P P Sbjct: 325 PRGSPGPP 332 >gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] Length = 1164 Score = 34.3 bits (77), Expect = 0.022 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 3 GERGRA--EGARAPASASGEPGPLASLRGASPSLELGRP--RSEVKAPSGPP-GLHSRSS 57 G+R R EG PA A EPGP P+ G +P GPP GL + + Sbjct: 361 GKRSRRSLEGGGCPARAP-EPGPTGPASPVGPTSSTGPALLTGPASSPVGPPSGLQASVN 419 Query: 58 PAPSASVEPQAWVRDERDAALAR 80 P+ SV P A ER AR Sbjct: 420 LFPTISVAPSADTSSERSIYKAR 442 >gi|28557729 hypothetical protein LOC283687 [Homo sapiens] Length = 130 Score = 34.3 bits (77), Expect = 0.022 Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 15/94 (15%) Query: 7 RAEGARAPASASGEPGP-LASLRGASPS-LELGRPRSEVKAPSGPPGLHSRSSPAPSASV 64 RA+ P S G P LASL +P+ L R R V A SGP LH P Sbjct: 45 RAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGIL- 103 Query: 65 EPQAWVRDERDAALARGRPSAPKTREQAPGEKPL 98 RD RG P+ P+ APG L Sbjct: 104 ---------RDVLRHRGVPAQPR---PAPGAHQL 125 >gi|239582765 ral guanine nucleotide dissociation stimulator-like 3 isoform 1 [Homo sapiens] Length = 716 Score = 33.9 bits (76), Expect = 0.029 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 9 EGARAPASASGEPGPLASLRGASPSLELGRPRSEVK---APSGPPGLHSRSSPAPSASVE 65 E + +P+ + G+P S SPS+ G P S + AP+G P S PS + Sbjct: 532 EKSSSPSGSPGDPSSPTSSLCISPSVSPGSPPSSPRSRDAPAGSPPA-SPGPQGPSTKLP 590 Query: 66 PQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVS 101 + R AL G P P +Q+ + + VS Sbjct: 591 LSLDLPSPRPFALPLGSPRIPLPAQQSSEARVIRVS 626 >gi|126090663 zinc finger homeodomain 4 [Homo sapiens] Length = 3571 Score = 33.9 bits (76), Expect = 0.029 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 18/116 (15%) Query: 1 MSGERGRAEGARAPASASGE-------PGPLASLRGASPSLELGRPRSEVKAPSGP---- 49 +SG+ A+ A APA++SG P P SP E + + PS P Sbjct: 2321 VSGQTDAAKNAAAPAASSGSGTSTPLIPSPKPEPEKTSPKPEYPAEKPKQSDPSPPSQGT 2380 Query: 50 ----PGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVS 101 P + S P +++ +PQ + + L PSA +T + PL++S Sbjct: 2381 KPALPLASTSSDPPQASTAQPQPQPQPPKQPQLIGRPPSASQTPVPS---SPLQIS 2433 >gi|41281612 zinc finger protein 828 [Homo sapiens] Length = 812 Score = 33.9 bits (76), Expect = 0.029 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 11 ARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS--GPPGLHSRSSPAPSASVEPQA 68 A P+ +P P+ S +L +P+ + P GPP S SP +AS EP Sbjct: 200 APVPSPEPQKPAPV-SPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWG 258 Query: 69 WVRDERDAALARGRPSAPKTREQAPGEKP 97 + R ++P+ R+ +P E P Sbjct: 259 PSPAASPESRKSARTTSPEPRKPSPSESP 287 >gi|182507165 thymus expressed gene 3-like [Homo sapiens] Length = 629 Score = 33.9 bits (76), Expect = 0.029 Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 24/115 (20%) Query: 4 ERGRAEGARAP-ASASGEPG-PLA--SLRGASPSLELGRPRSEVKAPSGPPGLHS----- 54 ER RA G R A ASG G P A + R S + LGR + PSGPP + Sbjct: 395 ERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASA---VPSGPPKYPTAEREE 451 Query: 55 ------RSSPAPSASVEPQAWVRDERDAALA------RGRPSAPKTREQAPGEKP 97 R PAP+ + + R R A R RP AP R PG P Sbjct: 452 PRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSP 506 >gi|122937424 one cut homeobox 3 [Homo sapiens] Length = 494 Score = 33.9 bits (76), Expect = 0.029 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 10 GARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS------GPPGLHSRSSPAPSAS 63 G PA S PL+ L A P G P+ P GPPG + P A+ Sbjct: 189 GKELPAMGS----PLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAA 244 Query: 64 VEPQAWVRDERDAALARGRP 83 EP A + + ALARG P Sbjct: 245 FEPHAALLGRAEDALARGLP 264 >gi|38348332 killer cell lectin-like receptor subfamily G, member 2 [Homo sapiens] Length = 409 Score = 33.9 bits (76), Expect = 0.029 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%) Query: 13 APASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRD 72 AP +G P+ + P+LE + ++V+ P GP SSP+P+ +VE A Sbjct: 8 APGGQAGAELPMEPVGSLVPTLEQPQVPAKVRQPEGP-----ESSPSPAGAVEKAAGAGL 62 Query: 73 ERDAALARGRPSAPKTREQAPGEKPLEVSW 102 E + + P R +P PL + + Sbjct: 63 EPSS-----KKKPPSPRPGSPRVPPLSLGY 87 >gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] Length = 904 Score = 33.9 bits (76), Expect = 0.029 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 29 GASPSLELGRP-RSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPK 87 G+S S E RP RS VK +G G R SP+ SAS P+ ++ R PS P Sbjct: 497 GSSSSSEDERPKRSHVK--NGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPP 554 Query: 88 T-REQAPGEKP 97 T R ++P P Sbjct: 555 TRRRRSPSPAP 565 Score = 30.8 bits (68), Expect = 0.24 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 18 SGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQA----W--VR 71 S P P + ASPS + R S ++ SG P ++ PAP + V+ Q+ W Sbjct: 725 SRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAV 784 Query: 72 DERDAALARGRPSAPKTREQAPGEK 96 + A PS P+ +Q G K Sbjct: 785 PVKKAKSPTPSPSPPRNSDQEGGGK 809 Score = 26.2 bits (56), Expect = 6.0 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 25 ASLRGASPSLELGRPRSEVKAP----SGPPGLHSRSSPAPS 61 ASL G+S S R RS K P S PP R SP+ S Sbjct: 353 ASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSAS 393 >gi|30795231 brain abundant, membrane attached signal protein 1 [Homo sapiens] Length = 227 Score = 33.5 bits (75), Expect = 0.038 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 26/118 (22%) Query: 7 RAEGARAPASASGEPGPLAS-------------------LRGASPSLELGRPRSEVKAPS 47 +AE +AP PGP A G PS E G P+ + +AP+ Sbjct: 97 KAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPK-KTEAPA 155 Query: 48 GPPGLHSRSSPAPSASVEP---QAWVRDERDAALARGRPSAPKTR---EQAPGEKPLE 99 P ++S AP++ +P +A + A S PK + A KP+E Sbjct: 156 APAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVE 213 >gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo sapiens] Length = 252 Score = 33.5 bits (75), Expect = 0.038 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 16/116 (13%) Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAP--------SGPPGLH 53 +G G A + PA SG+ P L A+ S GRPR+ AP SG GL Sbjct: 131 AGAAGAARAPKPPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALGLG 190 Query: 54 SRSSPAPSASVEPQ-----AWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSR 104 R A + P+ W L GR RE A P EV R Sbjct: 191 RREKLAARPAATPRRASRPPWQGCRGARGLGGGR---GPLREDAAALLPQEVQQER 243 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.305 0.124 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,322,565 Number of Sequences: 37866 Number of extensions: 414859 Number of successful extensions: 2715 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 545 Number of HSP's that attempted gapping in prelim test: 2120 Number of HSP's gapped (non-prelim): 1129 length of query: 110 length of database: 18,247,518 effective HSP length: 80 effective length of query: 30 effective length of database: 15,218,238 effective search space: 456547140 effective search space used: 456547140 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.