Guide to the Human Genome
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Name: LOC729421 Sequence: fasta or formatted (110aa) NCBI GI: 113416809
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {110aa} PREDICTED: hypothetical protein
alt mRNA {110aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         16           2
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate          10.0         11           1
 F phenylalanine       0.0          0           0
 G glycine            10.0         11           1
 H histidine           0.9          1           1
 I isoleucine          0.0          0           0
 K lysine              2.7          3           1
 L leucine             6.4          7           1
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline            14.5         16           2
 Q glutamine           1.8          2           1
 R arginine           11.8         13           1
 S serine             16.4         18           2
 T threonine           0.9          1           1
 V valine              4.5          5           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729421             1.000   PREDICTED: hypothetical protein 
LOC729421             1.000   PREDICTED: hypothetical protein 
LOC652614             0.061   PREDICTED: similar to MHC class I antigen 
C17orf56              0.061   hypothetical protein LOC146705 
HCN2                  0.051   hyperpolarization activated cyclic nucleotide-gated...
MARCKS                0.051   myristoylated alanine-rich protein kinase C substra...
HMGA2                 0.051   high mobility group AT-hook 2 isoform a 
ZNF716                0.051   PREDICTED: zinc finger protein 716 
DNM1                  0.051   dynamin 1 isoform 1 
GNAS                  0.051   GNAS complex locus alex 
DSCAML1               0.051   Down syndrome cell adhesion molecule like 1 
COL9A3                0.051   alpha 3 type IX collagen 
COL1A1                0.045   alpha 1 type I collagen preproprotein 
COL5A1                0.045   alpha 1 type V collagen preproprotein 
LOC100129654          0.045   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.045   PREDICTED: similar to transcription factor 23 [Homo...
TAF4                  0.045   TBP-associated factor 4 
CCBE1                 0.045   collagen and calcium binding EGF domains 1 
FHOD1                 0.045   formin homology 2 domain containing 1 
C15orf37              0.045   hypothetical protein LOC283687 
RGL3                  0.045   ral guanine nucleotide dissociation stimulator-like...
ZFHX4                 0.045   zinc finger homeodomain 4 
ZNF828                0.045   zinc finger protein 828 
DACT3                 0.045   thymus expressed gene 3-like 
ONECUT3               0.045   one cut homeobox 3 
KLRG2                 0.045   killer cell lectin-like receptor subfamily G, member...
SRRM1                 0.045   serine/arginine repetitive matrix 1 
BASP1                 0.040   brain abundant, membrane attached signal protein 1 [...
LOC100289126          0.040   PREDICTED: hypothetical protein XP_002343381 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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