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Search of human proteins with 169167926
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 331 1e-91
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 331 1e-91
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 328 1e-90
gi|111548662 hypothetical protein LOC348378 [Homo sapiens] 138 2e-33
gi|56090523 shisa homolog 2 [Homo sapiens] 42 2e-04
gi|122937450 shisa homolog 3 [Homo sapiens] 39 0.002
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.021
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.021
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 34 0.047
gi|39930575 shisa homolog 4 [Homo sapiens] 33 0.080
gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens] 33 0.10
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 33 0.14
gi|50284696 IBR domain containing 2 [Homo sapiens] 32 0.30
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 31 0.52
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 31 0.52
gi|21703710 scotin [Homo sapiens] 31 0.52
gi|150010659 hypothetical protein LOC85352 [Homo sapiens] 30 0.68
gi|33519481 neural cell adhesion molecule 2 precursor [Homo sapi... 30 0.68
gi|94538350 protocadherin 17 precursor [Homo sapiens] 30 0.68
gi|4506325 protein tyrosine phosphatase, receptor type, R isofor... 28 4.4
gi|222537743 protein tyrosine phosphatase, receptor type, Q [Hom... 28 4.4
gi|47578107 delangin isoform B [Homo sapiens] 28 4.4
gi|47578105 delangin isoform A [Homo sapiens] 28 4.4
gi|4503993 growth hormone receptor precursor [Homo sapiens] 27 5.7
gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens] 27 5.7
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 27 5.7
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 331 bits (849), Expect = 1e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 331 bits (849), Expect = 1e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 328 bits (841), Expect = 1e-90
Identities = 159/160 (99%), Positives = 159/160 (99%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLE SSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|111548662 hypothetical protein LOC348378 [Homo sapiens]
Length = 190
Score = 138 bits (347), Expect = 2e-33
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYMWSLS 64
S C+ Y S Q V F CPR G AA +CCGF D KYCC +P S+FPY+HSYMW LS
Sbjct: 2 SGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS 61
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQ-RLDTGLKLQHLEP 111
IGALIGL +AA+VLLAF+++ CVLCYLF+ +KP +LD GL LQ P
Sbjct: 62 IGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGP 109
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 42.4 bits (98), Expect = 2e-04
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 46/164 (28%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS-------------------- 47
C G+ + FQCP R +G CCG L+YCCS
Sbjct: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAG 97
Query: 48 EPGS-------------YFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLFLY 94
EPG Y P+ ++G A ++L +++ C L
Sbjct: 98 EPGRADKDGPDGSAVPIYVPF-----------LIVGSVFVAFIILGSLVAACCCRCLRPK 146
Query: 95 TKPQ--RLDTGLKLQHLEPSSTQEGKSNGKTKALNSNAASNATN 136
PQ R G +L P S G + +S AAS++++
Sbjct: 147 QDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSS 190
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 38.5 bits (88), Expect = 0.002
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
++ C G+ + ++ E FQCP + CCG L+YCC+
Sbjct: 23 QSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 35.4 bits (80), Expect = 0.021
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
E C GYY + + PF C A +CCG ++CC +
Sbjct: 55 EGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHD 96
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.021
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
E C GYY + + PF C A +CCG ++CC +
Sbjct: 55 EGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHD 96
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 34.3 bits (77), Expect = 0.047
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
C GYY ++ + + F+C G YCCG ++CC +
Sbjct: 94 CWGYYDVSGQYDKEFECNNSESGYL--YCCGTCYYRFCCKK 132
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 33.5 bits (75), Expect = 0.080
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYK-HSYMWSLSIG 66
C Y N S+ F C +CCG +YCC + + + + S
Sbjct: 31 CLWYLDRNGSWHPGFNCE------FFTFCCGTCYHRYCCRDLTLLITERQQKHCLAFSPK 84
Query: 67 ALIGLGIAALVLLAFVISVCVLCYL----FLYTKPQRLDTGLKLQHL 109
+ G+ +A++L V++ + C+L +LY + Q+L + + Q +
Sbjct: 85 TIAGIA-SAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEI 130
>gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens]
Length = 778
Score = 33.1 bits (74), Expect = 0.10
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQR---------LDTGLKLQHLEPSSTQ 115
IG +G G+A LVL+A +++ C + QR D +++ H EP+S +
Sbjct: 538 IGVAVGAGVAFLVLMATIVAFCC-------ARSQRNLKGVVSAKNDIRVEIVHKEPASGR 590
Query: 116 EGKSNGKTKAL 126
EG+ + K L
Sbjct: 591 EGEEHSTIKQL 601
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.14
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCC 46
+ LC GYY + + F C + ++CCG ++CC
Sbjct: 79 AELCHGYYDVMGQYDATFNCST----GSYRFCCGTCHYRFCC 116
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 31.6 bits (70), Expect = 0.30
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 23 QCP------RRGEGAALQYC--CGFADLKYCCSEPGSYFPYKH---------------SY 59
QCP R EG A C C YC + +H S
Sbjct: 192 QCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRNKLGHSRASV 251
Query: 60 MWSLS--IGALIGLGIAALVL--LAFVISVCVLC 89
MW+ + +G L+GLGI ALV L + S C++C
Sbjct: 252 MWNRTQVVGILVGLGIIALVTSPLLLLASPCIIC 285
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 30.8 bits (68), Expect = 0.52
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
C GY+ + + PF C +CCG ++CC+
Sbjct: 115 CRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCT 150
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 30.8 bits (68), Expect = 0.52
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
C GY+ + + PF C +CCG ++CC+
Sbjct: 115 CRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCT 150
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 30.8 bits (68), Expect = 0.52
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 37/98 (37%)
Query: 21 PFQCPRRGEGAALQYCCGFADLKYCCS------------------------EP----GSY 52
P CP +CCG D +YCCS EP GS
Sbjct: 41 PESCP--------DFCCGTCDDQYCCSDVLKKFVWSEERCAVPEASVPASVEPVEQLGSA 92
Query: 53 FPYKHSYMWSLS-IGALIGLGIAALVLLAFVISVCVLC 89
++ Y +S GA + +G+ VL I +C C
Sbjct: 93 LRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTC 130
>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
Length = 199
Score = 30.4 bits (67), Expect = 0.68
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFAD--LKYCCSE 48
+S R+C Y + F CPR + CC + KYCC+E
Sbjct: 24 LSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNE 73
>gi|33519481 neural cell adhesion molecule 2 precursor [Homo
sapiens]
Length = 837
Score = 30.4 bits (67), Expect = 0.68
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 63 LSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSNGK 122
L +GA+IGLG+AAL+L+ V V C+ GL + ++ S+GK
Sbjct: 699 LGLGAVIGLGVAALLLILVVTDVS--CFFI-------RQCGLLMCITRRMCGKKSGSSGK 749
Query: 123 TKALNSNAAS 132
+K L A+
Sbjct: 750 SKELEEGKAA 759
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 30.4 bits (67), Expect = 0.68
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
W +S+ ++ L +++LLA +I++ V C + + + E S Q G
Sbjct: 702 WDMSLPLIVTLSTISIILLAAMITIAVKC-----KRENKEIRTYNCRIAEYSHPQLGGGK 756
Query: 121 GKTKALNSN 129
GK K +N N
Sbjct: 757 GKKKKINKN 765
>gi|4506325 protein tyrosine phosphatase, receptor type, R isoform 1
precursor [Homo sapiens]
Length = 657
Score = 27.7 bits (60), Expect = 4.4
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 72 GIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQ-------HLEPSSTQEGKSNGKT 123
G A+V+ + + V C + LY +R L+ HL P + Q S KT
Sbjct: 227 GFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKT 285
>gi|222537743 protein tyrosine phosphatase, receptor type, Q [Homo
sapiens]
Length = 2299
Score = 27.7 bits (60), Expect = 4.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 102 TGLKLQHLEPSSTQEGKSNGKTKALNSNAASNATNETYYEA-DDIIQEKTMDAT 154
T KL LEP ST + + TK N N SN T E+ D++Q AT
Sbjct: 1298 TEAKLVGLEPVSTYSIRVSAFTKVGNGNQFSNVVKFTTQESVPDVVQNMQCMAT 1351
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 27.7 bits (60), Expect = 4.4
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 33 LQYCCGFADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLF 92
L+ CGF+D K Y P + + ++ +I G+ L F+ S +
Sbjct: 2553 LKNLCGFSDSKI-----QKYSPSESAKVYDKAINRKTGVHFHPKQTLDFLRSDMANSKIT 2607
Query: 93 LYTK----PQRLDTGLKLQHLEPSSTQE-----GKSNGKTKALNS-NAASNATNETYYEA 142
K Q LD L ++HL+P +E +N + KA+ S + N T E
Sbjct: 2608 EEVKRSIVKQYLDFKLLMEHLDPDEEEEEGEVSASTNARNKAITSLLGGGSPKNNTAAET 2667
Query: 143 DD 144
+D
Sbjct: 2668 ED 2669
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 27.7 bits (60), Expect = 4.4
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 33 LQYCCGFADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLF 92
L+ CGF+D K Y P + + ++ +I G+ L F+ S +
Sbjct: 2553 LKNLCGFSDSKI-----QKYSPSESAKVYDKAINRKTGVHFHPKQTLDFLRSDMANSKIT 2607
Query: 93 LYTK----PQRLDTGLKLQHLEPSSTQE-----GKSNGKTKALNS-NAASNATNETYYEA 142
K Q LD L ++HL+P +E +N + KA+ S + N T E
Sbjct: 2608 EEVKRSIVKQYLDFKLLMEHLDPDEEEEEGEVSASTNARNKAITSLLGGGSPKNNTAAET 2667
Query: 143 DD 144
+D
Sbjct: 2668 ED 2669
>gi|4503993 growth hormone receptor precursor [Homo sapiens]
Length = 638
Score = 27.3 bits (59), Expect = 5.7
Identities = 16/76 (21%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 76 LVLLAFVISVCVLCYLFLYTKPQRLDTGL-------KLQHLEPSSTQEGKSNGKTKALNS 128
L+++ + + V+ ++FL++K QR+ + K++ ++P +E GK + +N+
Sbjct: 269 LIIIFGIFGLTVMLFVFLFSKQQRIKMLILPPVPVPKIKGIDPDLLKE----GKLEEVNT 324
Query: 129 NAASNATNETYYEADD 144
A + + + + +DD
Sbjct: 325 ILAIHDSYKPEFHSDD 340
>gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens]
Length = 600
Score = 27.3 bits (59), Expect = 5.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 65 IGALIGLGIAALVLLAFVISVC 86
IG +G G+A LVL+A +++ C
Sbjct: 538 IGVAVGAGVAFLVLMATIVAFC 559
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 27.3 bits (59), Expect = 5.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 94 YTKPQRLDTGLKLQHLEPSSTQEGKSN 120
+TK L TGL+L + PSST+ G+ N
Sbjct: 2951 HTKGPTLPTGLELVNRPPSSTELGRPN 2977
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1434 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1474
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1424 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1464
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1424 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1464
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1445 GLSVGLSFCLRDLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1485
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,209,161
Number of Sequences: 37866
Number of extensions: 258890
Number of successful extensions: 866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 48
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.