Guide to the Human Genome
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Name: RNF144B Sequence: fasta or formatted (303aa) NCBI GI: 50284696
Description:

IBR domain containing 2

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         20           1
 C cysteine           10.9         33           2
 D aspartate           4.6         14           1
 E glutamate           4.6         14           1
 F phenylalanine       2.3          7           1
 G glycine             5.0         15           1
 H histidine           3.3         10           1
 I isoleucine          4.6         14           2
 K lysine              5.3         16           4
 L leucine            10.2         31           4
 M methionine          2.6          8           2
 N asparagine          2.6          8           1
 P proline             6.9         21           1
 Q glutamine           5.3         16           1
 R arginine            4.6         14           1
 S serine              5.0         15           2
 T threonine           5.6         17           2
 V valine              6.3         19           2
 W tryptophan          1.3          4           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   IBR domain containing 2 
RNF144A               0.517   ring finger protein 144 
RNF14                 0.131   ring finger protein 14 isoform 1 
RNF14                 0.131   ring finger protein 14 isoform 1 
RNF14                 0.131   ring finger protein 14 isoform 1 
RNF14                 0.131   ring finger protein 14 isoform 2 
RNF14                 0.131   ring finger protein 14 isoform 1 
RNF19B                0.123   ring finger protein 19B isoform b 
RNF19B                0.121   ring finger protein 19B isoform a 
RNF19A                0.117   ring finger protein 19 
RNF19A                0.117   ring finger protein 19 
ARIH2                 0.113   ariadne homolog 2 
ARIH1                 0.109   ariadne ubiquitin-conjugating enzyme E2 binding pro...
ANKIB1                0.085   ankyrin repeat and IBR domain containing 1 
RNF31                 0.079   ring finger protein 31 
RNF217                0.066   ring finger protein 217 
RBCK1                 0.065   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.065   RanBP-type and C3HC4-type zinc finger containing 1 ...
CUL9                  0.063   p53-associated parkin-like cytoplasmic protein [Homo...
RNF216                0.047   ring finger protein 216 isoform b 
RNF216                0.047   ring finger protein 216 isoform a 
PARK2                 0.030   parkin isoform 3 
PARK2                 0.030   parkin isoform 2 
PARK2                 0.030   parkin isoform 1 
CHFR                  0.020   checkpoint with forkhead and ring finger domains is...
CHFR                  0.020   checkpoint with forkhead and ring finger domains is...
CHFR                  0.020   checkpoint with forkhead and ring finger domains is...
CHFR                  0.020   checkpoint with forkhead and ring finger domains is...
CHFR                  0.019   checkpoint with forkhead and ring finger domains is...
DCAF15                0.017   DDB1 and CUL4 associated factor 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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