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Search of human proteins with 169167633
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 330 3e-91
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 328 1e-90
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 328 1e-90
gi|111548662 hypothetical protein LOC348378 [Homo sapiens] 137 4e-33
gi|56090523 shisa homolog 2 [Homo sapiens] 39 0.001
gi|122937450 shisa homolog 3 [Homo sapiens] 39 0.002
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.021
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.021
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 34 0.047
gi|39930575 shisa homolog 4 [Homo sapiens] 33 0.080
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 33 0.14
gi|50284696 IBR domain containing 2 [Homo sapiens] 32 0.30
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 31 0.52
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 31 0.52
gi|21703710 scotin [Homo sapiens] 31 0.52
gi|33519481 neural cell adhesion molecule 2 precursor [Homo sapi... 31 0.52
gi|94538350 protocadherin 17 precursor [Homo sapiens] 31 0.52
gi|150010659 hypothetical protein LOC85352 [Homo sapiens] 30 0.68
gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens] 30 0.88
gi|45439335 porcupine isoform D [Homo sapiens] 28 4.4
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 27 5.7
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 27 5.7
gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens] 27 5.7
gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi... 27 7.5
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 27 7.5
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 27 7.5
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 330 bits (846), Expect = 3e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 328 bits (841), Expect = 1e-90
Identities = 159/160 (99%), Positives = 159/160 (99%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLE SSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 328 bits (841), Expect = 1e-90
Identities = 159/160 (99%), Positives = 159/160 (99%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM
Sbjct: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYM 60
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLE SSTQEGKSN
Sbjct: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSN 120
Query: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY
Sbjct: 121 GKTKALNSNAASNATNETYYEADDIIQEKTMDATQIHIAY 160
>gi|111548662 hypothetical protein LOC348378 [Homo sapiens]
Length = 190
Score = 137 bits (345), Expect = 4e-33
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYMWSLS 64
S C+ Y S Q V F CPR G AA +CCGF D KYCC +P S+FPY+HSYMW LS
Sbjct: 2 SGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS 61
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQ-RLDTGLKLQ 107
IGALIGL +AA+VLLAF+++ CVLCYLF+ +KP +LD GL LQ
Sbjct: 62 IGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQ 105
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 39.3 bits (90), Expect = 0.001
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
C G+ + FQCP R +G CCG L+YCCS
Sbjct: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCS 77
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 38.5 bits (88), Expect = 0.002
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
++ C G+ + ++ E FQCP + CCG L+YCC+
Sbjct: 23 QSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 35.4 bits (80), Expect = 0.021
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
E C GYY + + PF C A +CCG ++CC +
Sbjct: 55 EGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHD 96
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.021
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 3 EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
E C GYY + + PF C A +CCG ++CC +
Sbjct: 55 EGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHD 96
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 34.3 bits (77), Expect = 0.047
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
C GYY ++ + + F+C G YCCG ++CC +
Sbjct: 94 CWGYYDVSGQYDKEFECNNSESGYL--YCCGTCYYRFCCKK 132
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 33.5 bits (75), Expect = 0.080
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYK-HSYMWSLSIG 66
C Y N S+ F C +CCG +YCC + + + + S
Sbjct: 31 CLWYLDRNGSWHPGFNCE------FFTFCCGTCYHRYCCRDLTLLITERQQKHCLAFSPK 84
Query: 67 ALIGLGIAALVLLAFVISVCVLCYL----FLYTKPQRLDTGLKLQHL 109
+ G+ +A++L V++ + C+L +LY + Q+L + + Q +
Sbjct: 85 TIAGIA-SAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEI 130
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.14
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCC 46
+ LC GYY + + F C + ++CCG ++CC
Sbjct: 79 AELCHGYYDVMGQYDATFNCST----GSYRFCCGTCHYRFCC 116
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 31.6 bits (70), Expect = 0.30
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 23 QCP------RRGEGAALQYC--CGFADLKYCCSEPGSYFPYKH---------------SY 59
QCP R EG A C C YC + +H S
Sbjct: 192 QCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRNKLGHSRASV 251
Query: 60 MWSLS--IGALIGLGIAALVL--LAFVISVCVLC 89
MW+ + +G L+GLGI ALV L + S C++C
Sbjct: 252 MWNRTQVVGILVGLGIIALVTSPLLLLASPCIIC 285
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 30.8 bits (68), Expect = 0.52
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
C GY+ + + PF C +CCG ++CC+
Sbjct: 115 CRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCT 150
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 30.8 bits (68), Expect = 0.52
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
C GY+ + + PF C +CCG ++CC+
Sbjct: 115 CRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCT 150
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 30.8 bits (68), Expect = 0.52
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 37/98 (37%)
Query: 21 PFQCPRRGEGAALQYCCGFADLKYCCS------------------------EP----GSY 52
P CP +CCG D +YCCS EP GS
Sbjct: 41 PESCP--------DFCCGTCDDQYCCSDVLKKFVWSEERCAVPEASVPASVEPVEQLGSA 92
Query: 53 FPYKHSYMWSLS-IGALIGLGIAALVLLAFVISVCVLC 89
++ Y +S GA + +G+ VL I +C C
Sbjct: 93 LRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTC 130
>gi|33519481 neural cell adhesion molecule 2 precursor [Homo
sapiens]
Length = 837
Score = 30.8 bits (68), Expect = 0.52
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 63 LSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSNGK 122
L +GA+IGLG+AAL+L+ V V C+ GL + ++ S+GK
Sbjct: 699 LGLGAVIGLGVAALLLILVVTDVS--CFFI-------RQCGLLMCITRRMCGKKSGSSGK 749
Query: 123 TKALNSNAAS 132
+K L A+
Sbjct: 750 SKELEEGKAA 759
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 30.8 bits (68), Expect = 0.52
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 61 WSLSIGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSN 120
W +S+ ++ L +++LLA +I++ V C + + + E S Q G
Sbjct: 702 WDMSLPLIVTLSTISIILLAAMITIAVKC-----KRENKEIRTYNCRIAEYSHPQLGGGK 756
Query: 121 GKTKALNSN 129
GK K +N N
Sbjct: 757 GKKKKINKN 765
>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
Length = 199
Score = 30.4 bits (67), Expect = 0.68
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MSEASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFAD--LKYCCSE 48
+S R+C Y + F CPR + CC + KYCC+E
Sbjct: 24 LSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNE 73
>gi|26006461 kin of IRRE like 3 isoform 1 [Homo sapiens]
Length = 778
Score = 30.0 bits (66), Expect = 0.88
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 16/71 (22%)
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQR---------LDTGLKLQHLEASSTQ 115
IG +G G+A LVL+A +++ C + QR D +++ H E +S +
Sbjct: 538 IGVAVGAGVAFLVLMATIVAFCC-------ARSQRNLKGVVSAKNDIRVEIVHKEPASGR 590
Query: 116 EGKSNGKTKAL 126
EG+ + K L
Sbjct: 591 EGEEHSTIKQL 601
>gi|45439335 porcupine isoform D [Homo sapiens]
Length = 461
Score = 27.7 bits (60), Expect = 4.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 75 ALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASST 114
AL LL V+S CV YLF Y P D L+ + +A T
Sbjct: 198 ALALLCLVLSTCVGPYLFPYFIPLNGDRLLRNKKRKARGT 237
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 27.3 bits (59), Expect = 5.7
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 57 HSYMWSLSIG---------ALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQ 107
H W + G LI AA VL AF+ V V CY ++ + R K+
Sbjct: 582 HGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNR-----KI- 635
Query: 108 HLEASSTQE-GKSNGKTKALN 127
H +A S Q S+G LN
Sbjct: 636 HKDAESAQSCTDSSGSFAKLN 656
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 27.3 bits (59), Expect = 5.7
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 57 HSYMWSLSIG---------ALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQ 107
H W + G LI AA VL AF+ V V CY ++ + R K+
Sbjct: 569 HGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNR-----KI- 622
Query: 108 HLEASSTQE-GKSNGKTKALN 127
H +A S Q S+G LN
Sbjct: 623 HKDAESAQSCTDSSGSFAKLN 643
>gi|239787787 kin of IRRE like 3 isoform 2 [Homo sapiens]
Length = 600
Score = 27.3 bits (59), Expect = 5.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 65 IGALIGLGIAALVLLAFVISVC 86
IG +G G+A LVL+A +++ C
Sbjct: 538 IGVAVGAGVAFLVLMATIVAFC 559
>gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 26.9 bits (58), Expect = 7.5
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 70 GLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSNGKTKALNSN 129
GLG+ L+LLA V+ LC+ L+ + +RL+ +ST + A+
Sbjct: 13 GLGLGGLLLLAVVLLSACLCW--LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDL 70
Query: 130 AASNATNETYYEADDIIQEKTMDA 153
+ T EA IQE TM A
Sbjct: 71 TSGAETR----EAPRRIQELTMPA 90
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 26.9 bits (58), Expect = 7.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQE-GKSNGKT 123
+ LI AA VL AF+ V V CY ++ + R K+ H +A S Q S+G
Sbjct: 661 MNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNR-----KI-HKDAESAQSCTDSSGSF 714
Query: 124 KALN 127
LN
Sbjct: 715 AKLN 718
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 26.9 bits (58), Expect = 7.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQE-GKSNGKT 123
+ LI AA VL AF+ V V CY ++ + R K+ H +A S Q S+G
Sbjct: 605 MNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNR-----KI-HKDAESAQSCTDSSGSF 658
Query: 124 KALN 127
LN
Sbjct: 659 AKLN 662
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1434 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1474
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1424 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1464
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1424 GLSVGLSFCLRNLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1464
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 28 GEGAALQYCCG--FADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLG 72
G L +C F L+YC G Y+P+ HS+ SL + +GLG
Sbjct: 1445 GLSVGLSFCLRDLFFPLRYC----GIYYPHGHSH--SLGLDLNLGLG 1485
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,984,523
Number of Sequences: 37866
Number of extensions: 241723
Number of successful extensions: 837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 49
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.