Guide to the Human Genome
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Name: SEMA6D Sequence: fasta or formatted (1011aa) NCBI GI: 24234729
Description:

semaphorin 6D isoform 1 precursor

Referenced in:

Semaphorins

Other entries for this name:
alt prot [476aa] semaphorin 6D isoform 6 precursor
alt prot [998aa] semaphorin 6D isoform 2 precursor
alt prot [1017aa] semaphorin 6D isoform 3 precursor
alt prot [1073aa] semaphorin 6D isoform 4 precursor
alt prot [597aa] semaphorin 6D isoform 5 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         62           2
 C cysteine            2.2         22           2
 D aspartate           5.4         55           2
 E glutamate           4.6         47           2
 F phenylalanine       4.3         43           3
 G glycine             5.3         54           2
 H histidine           3.7         37           2
 I isoleucine          4.1         41           2
 K lysine              6.1         62           2
 L leucine             7.8         79           3
 M methionine          2.8         28           1
 N asparagine          5.0         51           2
 P proline             7.4         75           3
 Q glutamine           3.6         36           2
 R arginine            5.5         56           2
 S serine              9.6         97           3
 T threonine           5.3         54           2
 V valine              6.6         67           2
 W tryptophan          0.7          7           1
 Y tyrosine            3.8         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 6D isoform 1 precursor 
SEMA6D                0.982   semaphorin 6D isoform 2 precursor 
SEMA6D                0.977   semaphorin 6D isoform 3 precursor 
SEMA6D                0.557   semaphorin 6D isoform 5 precursor 
SEMA6D                0.557   semaphorin 6D isoform 4 precursor 
SEMA6D                0.464   semaphorin 6D isoform 6 precursor 
SEMA6A                0.406   sema domain, transmembrane domain (TM), and cytoplas...
SEMA6C                0.296   semaphorin Y 
SEMA6B                0.296   semaphorin 6B precursor 
SEMA5B                0.138   semaphorin 5B isoform 1 
SEMA3D                0.137   semaphorin 3D 
SEMA3A                0.134   semaphorin 3A precursor 
SEMA3E                0.133   semaphorin 3E 
SEMA5A                0.132   semaphorin 5A 
SEMA3F                0.128   semaphorin 3F 
SEMA3B                0.126   semaphorin 3B isoform 1 precursor 
SEMA3C                0.126   semaphorin 3C 
SEMA4D                0.125   semaphorin 4D isoform 2 
SEMA4D                0.125   semaphorin 4D isoform 1 
SEMA3B                0.124   semaphorin 3B isoform 2 precursor 
SEMA4C                0.118   semaphorin 4C 
SEMA4B                0.114   semaphorin 4B precursor 
SEMA4B                0.114   semaphorin 4B precursor 
SEMA3G                0.110   semaphorin sem2 
SEMA4A                0.099   semaphorin B 
SEMA4F                0.097   semaphorin W 
SEMA4G                0.096   semaphorin 4G 
SEMA7A                0.053   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.053   semaphorin 7A isoform 2 preproprotein 
SEMA7A                0.044   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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