Guide to the Human Genome
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Name: LOC100290926 Sequence: fasta or formatted (765aa) NCBI GI: 239750811
Description:

PREDICTED: hypothetical protein XP_002347568

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9        122           5
 C cysteine            1.0          8           1
 D aspartate           2.9         22           2
 E glutamate           5.1         39           2
 F phenylalanine       1.6         12           1
 G glycine            11.0         84           2
 H histidine           3.3         25           2
 I isoleucine          2.6         20           1
 K lysine              2.0         15           1
 L leucine             9.9         76           4
 M methionine          0.5          4           1
 N asparagine          0.7          5           1
 P proline             9.2         70           3
 Q glutamine           4.7         36           2
 R arginine            7.5         57           2
 S serine              6.0         46           2
 T threonine           4.4         34           1
 V valine              9.4         72           3
 W tryptophan          1.4         11           2
 Y tyrosine            0.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          1.000   PREDICTED: hypothetical protein XP_002343379 
LOC100292157          0.856   PREDICTED: hypothetical protein 
TAF4                  0.013   TBP-associated factor 4 
EN1                   0.011   engrailed homeobox 1 
UNCX                  0.011   UNC homeobox 
LOC730456             0.011   PREDICTED: hypothetical protein 
FOXC1                 0.010   forkhead box C1 
ELN                   0.010   elastin isoform e precursor 
ELN                   0.010   elastin isoform d precursor 
ELN                   0.010   elastin isoform c precursor 
ELN                   0.010   elastin isoform b precursor 
ELN                   0.010   elastin isoform a precursor 
MBD6                  0.010   methyl-CpG binding domain protein 6 
AKNA                  0.010   AT-hook transcription factor 
ZCCHC2                0.009   zinc finger, CCHC domain containing 2 
FLG2                  0.009   filaggrin family member 2 
LOC100288699          0.009   PREDICTED: hypothetical protein XP_002343846 
NACA                  0.009   nascent polypeptide-associated complex alpha subuni...
LOC100291061          0.009   PREDICTED: hypothetical protein XP_002348193 
LOC100291479          0.009   PREDICTED: hypothetical protein XP_002348186 
LOC100291447          0.009   PREDICTED: hypothetical protein XP_002348185 
FLJ31945              0.009   PREDICTED: hypothetical protein 
LOC100287602          0.009   PREDICTED: hypothetical protein XP_002343855 
FLJ31945              0.009   PREDICTED: hypothetical protein 
LOC100128074          0.009   PREDICTED: hypothetical protein 
PPP1R13L              0.009   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.009   protein phosphatase 1, regulatory subunit 13 like [H...
COL1A1                0.009   alpha 1 type I collagen preproprotein 
LOC645321             0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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