Guide to the Human Genome
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Search of human proteins with 169166958

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]
         (54 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]           113   3e-26
gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]            113   3e-26
gi|88974375 PREDICTED: hypothetical protein [Homo sapiens]            113   3e-26
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa...    33   0.048
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ...    32   0.11 
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ...    32   0.11 
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    31   0.18 
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|120587019 zinc finger protein 318 [Homo sapiens]                    31   0.24 
gi|11321565 matrilin 3 precursor [Homo sapiens]                        30   0.31 
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             30   0.31 
gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]            30   0.41 
gi|14249622 ajuba isoform 1 [Homo sapiens]                             30   0.41 
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]      30   0.41 
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    30   0.53 
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    30   0.53 
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ...    30   0.53 
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ...    30   0.53 
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.69 
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          29   0.69 
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]            29   0.69 

>gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score =  113 bits (283), Expect = 3e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
          MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54


>gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score =  113 bits (283), Expect = 3e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
          MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54


>gi|88974375 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score =  113 bits (283), Expect = 3e-26
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
          MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/47 (36%), Positives = 20/47 (42%)

Query: 2   PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
           P +   R A   APR     PR   G    R G  +PG  +H  LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/47 (36%), Positives = 20/47 (42%)

Query: 2   PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
           P +   R A   APR     PR   G    R G  +PG  +H  LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/47 (36%), Positives = 20/47 (42%)

Query: 2   PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
           P +   R A   APR     PR   G    R G  +PG  +H  LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200


>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
           sapiens]
          Length = 402

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGA-REPGTISHIRLRGS 49
           G+ P R   AAA +  PG    G+GG   RRGA  +P T S    R S
Sbjct: 103 GEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSS 150


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)

Query: 5   APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
           A G A   ++PR  P RP R              GS G  RRRG+R+P  G ++  R RG
Sbjct: 52  AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111


>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
           sapiens]
          Length = 315

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)

Query: 5   APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
           A G A   ++PR  P RP R              GS G  RRRG+R+P  G ++  R RG
Sbjct: 52  AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111


>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
           sapiens]
          Length = 315

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)

Query: 5   APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
           A G A   ++PR  P RP R              GS G  RRRG+R+P  G ++  R RG
Sbjct: 52  AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
            containing 2 [Homo sapiens]
          Length = 1455

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 4    QAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
            +A GRA A A PR  P  P    GG P R+ A  PG
Sbjct: 1401 EAEGRAGARAGPRPGPRPP----GGAPARKAAVAPG 1432


>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
           G+A G A  +A  RR P R  RG+ G  RR G R  G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188


>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
           G+A G A  +A  RR P R  RG+ G  RR G R  G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188


>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
           G+A G A  +A  RR P R  RG+ G  RR G R  G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188


>gi|120587019 zinc finger protein 318 [Homo sapiens]
          Length = 2279

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 2   PGQAPGRAAAAAAPRR-----SPGRPRRGSGGPPRRRGAREPG 39
           P    GR A+ + PR      SP R RRGS  PPR R    PG
Sbjct: 60  PSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPG 102


>gi|11321565 matrilin 3 precursor [Homo sapiens]
          Length = 486

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 2  PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGA 35
          PG +PGR  + AAP    G P  G+  P R RGA
Sbjct: 44 PGGSPGRRPSPAAP---DGAPASGTSEPGRARGA 74


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 7   GRAAAAAAPRRSPGRPRR---GSGGPPRRRGAREP 38
           GRAA  A  RR   R RR    S   PRRRG R P
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRP 411



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 6   PGRAAAAAAPRRSP---GRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
           P R   + +PR +P   GR  R +GG  RRR  R        R R S   PR
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRR----RRRRSRSSASAPR 404


>gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 318

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRG---SGGPPRRRGA 35
           G+AP + A  AAP   PGR RRG   +G  PR  GA
Sbjct: 260 GKAPAQGAFPAAP---PGRGRRGPARTGAEPRAEGA 292


>gi|14249622 ajuba isoform 1 [Homo sapiens]
          Length = 538

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 2  PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIR-LRGSRILPR 54
          PG   GR +    PR+S  R   G  G      ARE G++   R  RGS   PR
Sbjct: 31 PGPGKGRLSGLGGPRKSGPRGATGGPGDEPLEPAREQGSLDAERNQRGSFEAPR 84


>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
          Length = 1185

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGP--PRRRGAR--EPGTISHI 44
           G APG  AA A+P    G    G GG   P RRG R  + G++ ++
Sbjct: 150 GSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENV 195


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
           G AP R   AA PR   G  +RG  G  R  RGAR  G     R RG R
Sbjct: 470 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGVR 516


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
           G AP R   AA PR   G  +RG  G  R  RGAR  G     R RG R
Sbjct: 505 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGVR 551


>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
           sapiens]
          Length = 177

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 2   PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHI 44
           PG   G A   A P  +PGR       PP RR  RE GT + +
Sbjct: 104 PGSPAGPAPTRARPLGAPGR-----SAPPARRRERELGTDARV 141


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
          +P   P R +    P+R PGRP R  G   RR     PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94


>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
          +P   P R +    P+R PGRP R  G   RR     PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94


>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
           sapiens]
          Length = 177

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 2   PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHI 44
           PG   G A   A P  +PGR       PP RR  RE GT + +
Sbjct: 104 PGSPAGPAPTRARPLGAPGR-----SAPPARRRERELGTDARV 141


>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
          +P   P R +    P+R PGRP R  G   RR     PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 3   GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
           G AP R   AA PR   G  +RG  G  R  RGAR  G     R RG +
Sbjct: 505 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGGK 551


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 2  PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRL 46
          P  +P  AAA AA  R        +G P   RGA EPG   H RL
Sbjct: 30 PPPSPSAAAAGAAGARGSE-----TGDPGSPRGAEEPGKKRHERL 69


>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 1   MPGQAPGRAAAAAAPRRSPG---RPRRGSGGPPRRRGAR--EPG 39
           +PG+  G    AA P R P    RP R +  P  RR AR  EPG
Sbjct: 86  LPGRGRGAPGCAALPSRLPSPRPRPSRRAPPPVSRRTARGWEPG 129


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,348,411
Number of Sequences: 37866
Number of extensions: 184857
Number of successful extensions: 2859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 2510
Number of HSP's gapped (non-prelim): 484
length of query: 54
length of database: 18,247,518
effective HSP length: 28
effective length of query: 26
effective length of database: 17,187,270
effective search space: 446869020
effective search space used: 446869020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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