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Search of human proteins with 169166892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169166892 PREDICTED: hypothetical protein [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166892 PREDICTED: hypothetical protein [Homo sapiens] 516 e-147
gi|169166322 PREDICTED: hypothetical protein [Homo sapiens] 516 e-147
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 4e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 45 4e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 38 0.007
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 37 0.016
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 37 0.021
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 36 0.027
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 36 0.027
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 36 0.027
gi|239753738 PREDICTED: hypothetical protein [Homo sapiens] 36 0.035
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 35 0.046
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 35 0.046
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 35 0.046
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 35 0.046
gi|171543895 ataxin 2 [Homo sapiens] 35 0.046
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 35 0.046
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 35 0.060
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 35 0.060
gi|50345997 E1A binding protein p300 [Homo sapiens] 35 0.078
gi|151301154 mucin 6, gastric [Homo sapiens] 35 0.078
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 34 0.10
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 34 0.10
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 34 0.10
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 34 0.13
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.17
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.17
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17
>gi|169166892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 516 bits (1329), Expect = e-147
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG
Sbjct: 1 MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
Query: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA 120
QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA
Sbjct: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA 120
Query: 121 LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS 180
LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS
Sbjct: 121 LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS 180
Query: 181 HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR 240
HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR
Sbjct: 181 HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR 240
Query: 241 FLYLFL 246
FLYLFL
Sbjct: 241 FLYLFL 246
>gi|169166322 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 516 bits (1329), Expect = e-147
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG
Sbjct: 1 MGPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
Query: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA 120
QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA
Sbjct: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA 120
Query: 121 LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS 180
LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS
Sbjct: 121 LAPSHCRSLRGPQRRSNSSLSVVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLS 180
Query: 181 HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR 240
HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR
Sbjct: 181 HKGEPSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFLHHHHSPPRR 240
Query: 241 FLYLFL 246
FLYLFL
Sbjct: 241 FLYLFL 246
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.4 bits (106), Expect = 4e-05
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 26/136 (19%)
Query: 8 QRPP--AFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGV 65
QRPP P +PGP QGP P + R P G SG GP G
Sbjct: 459 QRPPPQGGPPQPGPGPQR---QGP--PLQQRPPPQGQQHLSGLGPPAGS----------- 502
Query: 66 VHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSH 125
P P+ +P P PA++ P G Q R AGGP P +PS
Sbjct: 503 --PLPQRLPSPTSAPQQPASQAAPPT------QGQGRQSRPVAGGPGAPPAARPPASPSP 554
Query: 126 CRSLRGPQRRSNSSLS 141
R PQ +S+S
Sbjct: 555 QRQAGPPQATRQTSVS 570
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.4 bits (106), Expect = 4e-05
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 26/136 (19%)
Query: 8 QRPP--AFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGV 65
QRPP P +PGP QGP P + R P G SG GP G
Sbjct: 459 QRPPPQGGPPQPGPGPQR---QGP--PLQQRPPPQGQQHLSGLGPPAGS----------- 502
Query: 66 VHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSH 125
P P+ +P P PA++ P G Q R AGGP P +PS
Sbjct: 503 --PLPQRLPSPTSAPQQPASQAAPPT------QGQGRQSRPVAGGPGAPPAARPPASPSP 554
Query: 126 CRSLRGPQRRSNSSLS 141
R PQ +S+S
Sbjct: 555 QRQAGPPQATRQTSVS 570
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 38.1 bits (87), Expect = 0.007
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 10 PPAFPRRPGPHAHTLATQGPRRPRRHRIPNS--GLSPFSGDGPTVGQSDSYRGQKPGVVH 67
PP P G +GP P+ P G+ GD Q S KPGV
Sbjct: 359 PPGLPGSAGLPGR----RGPPGPKGEAGPGGPPGVPGIRGD-----QGPSGLAGKPGV-- 407
Query: 68 PRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSHCR 127
P R +P + PP P + P F G R GP G L LPG+ PS
Sbjct: 408 PGERGLPGAHGPPG-PTGPKGEPGFTG-RPGGPGVAGALGQKGDLGLPGQPGLRGPSGIP 465
Query: 128 SLRGP 132
L+GP
Sbjct: 466 GLQGP 470
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 37.0 bits (84), Expect = 0.016
Identities = 52/184 (28%), Positives = 61/184 (33%), Gaps = 30/184 (16%)
Query: 10 PPAFPRRPGPH---------AHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
PP PR PH A L RPR P SPF T G++ RG
Sbjct: 128 PPLQPRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRG 187
Query: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRA 120
PRPR HP SPA R P+ + P + A G P
Sbjct: 188 D------PRPRAPRPGDHPRRSPALRE-TPSLS---PPSPGRRNGKRAAGKGTTPQPQPP 237
Query: 121 LAPSHCRSLRGPQRRSNSSLSVVGARMRECS-GVGVFWPKCLRIRKRKPSSGCTLLVS-T 178
P R R+ S G R G G R + G TL++S T
Sbjct: 238 PPPCATRREEDMALRTRDRTSSRGTVFRAADWGFG---------RSEQHLRGLTLIISCT 288
Query: 179 LSHK 182
LSHK
Sbjct: 289 LSHK 292
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 36.6 bits (83), Expect = 0.021
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 33/153 (21%)
Query: 7 LQRPPAFPRRPGPHAHTLATQG----------PRRPRRHRIPNSGLSPFSGDGPTVGQSD 56
L+RPP PRR H+L +G P +P R + P P +G G +
Sbjct: 494 LKRPPPPPRR----THSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAP 549
Query: 57 S--------YRGQKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAA 108
G PG PR R P + +++ P +AGP A
Sbjct: 550 CPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPAS----- 604
Query: 109 GGPLELPGELRALAPSHCRSLRGPQRRSNSSLS 141
PG+ + P SLR P +SSL+
Sbjct: 605 ------PGKAQPPKPERVTSLRSPGASVSSSLT 631
Score = 33.5 bits (75), Expect = 0.17
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 29/115 (25%)
Query: 10 PPAFPRRPGPHAHTLA----TQGP-----RRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
PP+ PR P P A LA GP P+ P + L+P + P + + S
Sbjct: 673 PPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQ-ESPVISKDQS--- 728
Query: 61 QKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELP 115
P P P P +YHPP P + V V PSA A PL+ P
Sbjct: 729 -------PPPSP-PPSYHPPPPPTKKPEVV------VEAPSAS--ETAEEPLQDP 767
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 36.2 bits (82), Expect = 0.027
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 10 PPAFPRRPGPHAHTLATQGPRR--PRRHRIPNSGLSPFSGDGPT-VGQSDSYRGQKPGVV 66
PP P+ P P AT P + P + PN +P + T + Q+ + Q+P
Sbjct: 201 PPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSP 260
Query: 67 HPRPRPIPRNYHPPNSP----AARRLVPAFA--GCRVAGPSAQLRSAAGGPLELPG 116
HP P P P HPP P A + P+ A GP AG L+ PG
Sbjct: 261 HPPPHPSP---HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPG 313
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 36.2 bits (82), Expect = 0.027
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 10 PPAFPRRPGPHAHTLATQGPRR--PRRHRIPNSGLSPFSGDGPT-VGQSDSYRGQKPGVV 66
PP P+ P P AT P + P + PN +P + T + Q+ + Q+P
Sbjct: 755 PPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSP 814
Query: 67 HPRPRPIPRNYHPPNSP----AARRLVPAFA--GCRVAGPSAQLRSAAGGPLELPG 116
HP P P P HPP P A + P+ A GP AG L+ PG
Sbjct: 815 HPPPHPSP---HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPG 867
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 36.2 bits (82), Expect = 0.027
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 10 PPAFPRRPGPHAHTLATQGPRR--PRRHRIPNSGLSPFSGDGPT-VGQSDSYRGQKPGVV 66
PP P+ P P AT P + P + PN +P + T + Q+ + Q+P
Sbjct: 755 PPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSP 814
Query: 67 HPRPRPIPRNYHPPNSP----AARRLVPAFA--GCRVAGPSAQLRSAAGGPLELPG 116
HP P P P HPP P A + P+ A GP AG L+ PG
Sbjct: 815 HPPPHPSP---HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPG 867
>gi|239753738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 35.8 bits (81), Expect = 0.035
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 64 GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAP 123
G P+P P P+ P AA+R GC G ++ +SAA L PG LR +A
Sbjct: 39 GARRPQPGPYPKRLLCPLGVAAKR------GCVEFGAGSRSQSAAADRLPGPGYLRVVA- 91
Query: 124 SHCRSLRGPQRRSNSSLSVVGARMRECSGV 153
+ P+RR + +G R SGV
Sbjct: 92 -----RKVPRRRLTRACPRLGKSRRAPSGV 116
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 35.4 bits (80), Expect = 0.046
Identities = 49/165 (29%), Positives = 59/165 (35%), Gaps = 31/165 (18%)
Query: 12 AFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSY-----------RG 60
A P +P P P R SGL+ G G G + S R
Sbjct: 289 ARPGKPAPRG-----SAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA 343
Query: 61 QKP-----GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELP 115
+P GV H RP P PP SP+ R P R++ P A R+AA LP
Sbjct: 344 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAP-RAAA-----LP 397
Query: 116 GELRALAPSHCRSLRGPQRR--SNSSLSVVGARM-RECSGVGVFW 157
G + LAPS G + S G R R G GV W
Sbjct: 398 G-IAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPW 441
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.4 bits (80), Expect = 0.046
Identities = 49/165 (29%), Positives = 59/165 (35%), Gaps = 31/165 (18%)
Query: 12 AFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSY-----------RG 60
A P +P P P R SGL+ G G G + S R
Sbjct: 387 ARPGKPAPRG-----SAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA 441
Query: 61 QKP-----GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELP 115
+P GV H RP P PP SP+ R P R++ P A R+AA LP
Sbjct: 442 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAP-RAAA-----LP 495
Query: 116 GELRALAPSHCRSLRGPQRR--SNSSLSVVGARM-RECSGVGVFW 157
G + LAPS G + S G R R G GV W
Sbjct: 496 G-IAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPW 539
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.4 bits (80), Expect = 0.046
Identities = 49/165 (29%), Positives = 59/165 (35%), Gaps = 31/165 (18%)
Query: 12 AFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSY-----------RG 60
A P +P P P R SGL+ G G G + S R
Sbjct: 387 ARPGKPAPRG-----SAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA 441
Query: 61 QKP-----GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELP 115
+P GV H RP P PP SP+ R P R++ P A R+AA LP
Sbjct: 442 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAP-RAAA-----LP 495
Query: 116 GELRALAPSHCRSLRGPQRR--SNSSLSVVGARM-RECSGVGVFW 157
G + LAPS G + S G R R G GV W
Sbjct: 496 G-IAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPW 539
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 35.4 bits (80), Expect = 0.046
Identities = 47/172 (27%), Positives = 63/172 (36%), Gaps = 31/172 (18%)
Query: 10 PPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG-QKPGVVHP 68
P A RRPGP ++ G + R P S P P + S + RG +P P
Sbjct: 81 PSAKCRRPGPGVSAVSAGG-----QQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRP 135
Query: 69 RPRPIPRNYHPPNSPAARRLVPAFAG-CRVAGPSAQLRSAAGGPL----ELPGELRAL-- 121
P P +SP A R A A + + + R GGP ++P E + L
Sbjct: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRL 195
Query: 122 -----------------APSHCRSLRGPQRRSNS-SLSVVGARMRECSGVGV 155
AP R G Q + +S VGA +R C G GV
Sbjct: 196 LLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGV 247
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 35.4 bits (80), Expect = 0.046
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 44/173 (25%)
Query: 9 RPPAFPRRPGPH--AH-----------TLATQGP--------RRPRRHRIP------NSG 41
RPP+ P RP H AH ++++GP R PR HR+ +SG
Sbjct: 587 RPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSG 646
Query: 42 LS------PFSGDGPTVGQSDSYRGQKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGC 95
L P P V ++ G VV PR P+ H P SP + +G
Sbjct: 647 LEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKT-HRPRSPRQNSIGNTPSGP 705
Query: 96 RVAGPSAQL--RSAAGGPLEL-------PGELRALAP-SHCRSLRGPQRRSNS 138
+A P A + A P+ P RA+ P S + R +R NS
Sbjct: 706 VLASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNS 758
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 35.4 bits (80), Expect = 0.046
Identities = 43/132 (32%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 9 RPPAFPRRPGPHAHTLATQGPRRPRRHR----IPNSGLSPFSGDGPTVGQSDSYR---GQ 61
RP PRRP P A L + R RRHR P + SP P G+S + G
Sbjct: 77 RPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGA 136
Query: 62 KPGVVH-PRPRPIPRNYHP--PNSPAARRLV-PAFAGCRVAG---PSAQLR------SAA 108
PGV RP HP P SP V P G A P +R +AA
Sbjct: 137 APGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAA 196
Query: 109 GGPLELPGELRA 120
PL L G +++
Sbjct: 197 APPLTLEGPVQS 208
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 35.0 bits (79), Expect = 0.060
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 9 RPPAFPRRPGPHAHTLATQGPRRPRRH---------RIPNSGLSP---FSGDGPTVGQS- 55
RPP R PGP L +G R +H R+P + SP SG GP S
Sbjct: 40 RPPG--RAPGPGTLFLLGKGSPRLAQHPAARRSHGSRLPRTSGSPEEGVSGHGPAAAASL 97
Query: 56 DSYRGQKPGVVHPRPRPIPRNYHPPNS-PAARRLVPA 91
+ P H +P+P+ R PP S PAA P+
Sbjct: 98 PRAQVPTPPPSHAQPQPLQRTLPPPTSLPAALDPAPS 134
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.0 bits (79), Expect = 0.060
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 27 QGPRRPRRH-RIPNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPRPRPIPRNYHPPN---- 81
+GP H P GL P GP Q YRG P ++P P P Y P
Sbjct: 219 EGPDSKLHHGHDPRGGLQP---SGPP--QFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRY 273
Query: 82 -SPAARRLVPAFAGCRVAGPSAQLRSAAGGP 111
+P P AG R +GP +L G P
Sbjct: 274 PTPDGPSRFPRVAGPRGSGPPMRLVEPVGRP 304
Score = 34.3 bits (77), Expect = 0.10
Identities = 49/185 (26%), Positives = 68/185 (36%), Gaps = 39/185 (21%)
Query: 23 TLATQGPRRPRRHRIP-------NSGLSPFSGDGPTVGQSDSYRGQKPGVVHP------- 68
+ ++Q P R++R P +SG S G G G++ RG K P
Sbjct: 1384 SFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPP 1443
Query: 69 --RPRPIPRNYHPPNSPAARRLVPAF---------AGCRVAGPSAQLRSAAGGPLELPGE 117
RP +P PP+S A RL A +++ + + G P PG
Sbjct: 1444 EERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGL 1503
Query: 118 LRA-LAPSHCRSLRGPQRRSNSSLSV-------------VGARMRECSGVGVFWPKCLRI 163
+A PS R +R NS LS VG R+ +GV F PK
Sbjct: 1504 PQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRER 1563
Query: 164 RKRKP 168
RKP
Sbjct: 1564 PPRKP 1568
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 34.7 bits (78), Expect = 0.078
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 29 PRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPRPRPIPRNYHPPNSPAAR-- 86
P P++H +PN SP G + S S + + P P P P P++ P +SP+ R
Sbjct: 2277 PMSPQQHMLPNQAQSPHL-QGQQIPNSLSNQVRSP---QPVPSPRPQSQPPHSSPSPRMQ 2332
Query: 87 -RLVPAFAGCRVAGPSAQLRSAAGGPLE 113
+ P + + P L +A P+E
Sbjct: 2333 PQPSPHHVSPQTSSPHPGLVAAQANPME 2360
Score = 33.9 bits (76), Expect = 0.13
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 39 NSGLSPFS--------GDGPTVGQSDSYRGQKPGVVHPRPRPIPRNYHPPNSPAARRLVP 90
++ LSPF+ G P +GQ + + Q+PG+V P + + H + P R+L+
Sbjct: 281 SNNLSPFAMDKKAVPGGGMPNMGQQPAPQVQQPGLVTPVAQGMGSGAHTAD-PEKRKLIQ 339
Query: 91 AFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSHCRSLRGPQRRSNSSLSVVGARMREC 150
+ Q R A GE+R HCR+++ S ++ C
Sbjct: 340 QQLVLLLHAHKCQRREQAN------GEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHC 393
Query: 151 SG---VGVFWPKCLR 162
+ + W C R
Sbjct: 394 ASSRQIISHWKNCTR 408
Score = 31.6 bits (70), Expect = 0.66
Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 16/123 (13%)
Query: 3 PRVHLQRPPAFPRR-PGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQ 61
P +H P P R P PH HT + G ++P IP P G
Sbjct: 825 PALHQNSPSPVPSRTPTPH-HTPPSIGAQQPPATTIP----------APVPTPPAMPPGP 873
Query: 62 KPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAG-PSAQLRSAAGGPLELPGELRA 120
+ +HP PR P PP + +++ P+ A P Q RS +P
Sbjct: 874 QSQALHPPPRQTPT---PPTTQLPQQVQPSLPAAPSADQPQQQPRSQQSTAASVPTPTAP 930
Query: 121 LAP 123
L P
Sbjct: 931 LLP 933
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 34.7 bits (78), Expect = 0.078
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 15 RRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPR---PR 71
R P H ++ + P P P +G SPFS GP S P HP+ P
Sbjct: 1555 RTPVAHTNSATSSRPPPPFTTHSPPTGSSPFSSTGPMTATSFKTTTTYPTPSHPQTTLPT 1614
Query: 72 PIPRNYHPPNSPAARRLV-PAFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSH 125
+P +P+ ++ P A SA + S G + P L+A +H
Sbjct: 1615 HVPPFSTSLVTPSTHTVITPTHA---QMATSASIHSMPTGTIPPPTTLKATGSTH 1666
Score = 31.2 bits (69), Expect = 0.86
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 19 PHAHTLATQGPRRPRRHRI--PNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPR---PRPI 73
P AHT + R P P +G SPFS GP S P HP+ P +
Sbjct: 1950 PVAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTATSFQTTTTYPTPSHPQTTLPTHV 2009
Query: 74 PRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAPSH 125
P +P+ ++ SA + S G + P L+A +H
Sbjct: 2010 PPFSTSLVTPSTHTVI--ITTHTQMATSASIHSTPTGTVPPPTTLKATGSTH 2059
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 0.10
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 2 GPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGP----------T 51
GPR L+ P P RPGP L + P +P S P + P T
Sbjct: 63 GPRAGLREWPQQPWRPGPLGAPLQDRAPSA----HVPGSASRPTATPAPPRCSRRPPTTT 118
Query: 52 VGQSDSYRGQKPGVVHPRPRPIPRNYHPP---NSPAARRLVPAFAGCRVAGPSAQLRSAA 108
V + G +P +H P P++ PP P R PAF V G +
Sbjct: 119 VSRVAPSPG-RPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQL 177
Query: 109 GGP 111
GP
Sbjct: 178 RGP 180
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 0.10
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 2 GPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGP----------T 51
GPR L+ P P RPGP L + P +P S P + P T
Sbjct: 63 GPRAGLREWPQQPWRPGPLGAPLQDRAPSA----HVPGSASRPTATPAPPRCSRRPPTTT 118
Query: 52 VGQSDSYRGQKPGVVHPRPRPIPRNYHPP---NSPAARRLVPAFAGCRVAGPSAQLRSAA 108
V + G +P +H P P++ PP P R PAF V G +
Sbjct: 119 VSRVAPSPG-RPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQL 177
Query: 109 GGP 111
GP
Sbjct: 178 RGP 180
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 0.10
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 2 GPRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGP----------T 51
GPR L+ P P RPGP L + P +P S P + P T
Sbjct: 63 GPRAGLREWPQQPWRPGPLGAPLQDRAPSA----HVPGSASRPTATPAPPRCSRRPPTTT 118
Query: 52 VGQSDSYRGQKPGVVHPRPRPIPRNYHPP---NSPAARRLVPAFAGCRVAGPSAQLRSAA 108
V + G +P +H P P++ PP P R PAF V G +
Sbjct: 119 VSRVAPSPG-RPAGLHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSERPRQEQL 177
Query: 109 GGP 111
GP
Sbjct: 178 RGP 180
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 34.3 bits (77), Expect = 0.10
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 38 PNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRV 97
P SG P SG GPT + PG P P P + P P A P A
Sbjct: 137 PTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTP---PSSGVPTTPPQAGGPPPPPAAVPG 193
Query: 98 AGPSAQLRSAAGGPL--ELPG 116
GP + GGP ++PG
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPG 214
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 33.9 bits (76), Expect = 0.13
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 8 QRPPAFPRRPGPHAHTLATQGPRRPRRHR 36
QR P P PH HTL P PRRHR
Sbjct: 112 QRTPTLPPPATPHQHTLVVCLPSHPRRHR 140
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.17
Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 14 PRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPRPRPI 73
P RP P+ +G +R R P + G+ PT + + G +P P P+
Sbjct: 154 PPRPPPNLQ----EGGQRAIFQRPP-----VYLGNKPTPPRQEGSFGGRPKSQPPLPQET 204
Query: 74 --PRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGP-----LELPGELRALAPSHC 126
P P +P AR PA+ GP + S GP L LPG + AP
Sbjct: 205 AAPAPQPGPTAPPARP--PAYESRE--GPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
Query: 127 RSLRG---------------PQRRSNSSLSVVGARMRECSGVGVFWP--------KCLRI 163
G PQ S + VG R +C G P +C
Sbjct: 261 ELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFC 320
Query: 164 RKRKPSSG 171
R+R+ G
Sbjct: 321 RRRRRRGG 328
Score = 31.6 bits (70), Expect = 0.66
Identities = 57/243 (23%), Positives = 77/243 (31%), Gaps = 51/243 (20%)
Query: 2 GPRVHLQRPPAFPRRPGPHAHTLAT-QGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
GP RPPA+ R GP + GP +P +P SP + P + + G
Sbjct: 212 GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSP-APPAPELRE-----G 265
Query: 61 QKPGVVHPRPRPIPRNYHPPNSP--------------AARRLVPAFAG----CRV----- 97
+ PG R RP PR A PA +G CR
Sbjct: 266 RAPGSTAGR-RPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
Query: 98 ---AGPSAQLRSAAGGPLELPGE----------LRALAPSHCR---SLRGPQRRSNSSLS 141
G + A GP PG LRA + R L P RR + +L
Sbjct: 325 RRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQ 384
Query: 142 VVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLSHKGEPSSGALSRAFKCTKAND 201
G S W R +R +SG ++ S P + + + C
Sbjct: 385 RFGGGRNLKSN----WMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQ 440
Query: 202 TVP 204
VP
Sbjct: 441 VVP 443
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.5 bits (75), Expect = 0.17
Identities = 39/136 (28%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 3 PRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQK 62
P + P + PG A A GP RR +G P GQ ++
Sbjct: 69 PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRR-----------AGHMPASGQVEA----- 112
Query: 63 PGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALA 122
RN H P A R P F R+ P A S A P LP +
Sbjct: 113 ------------RNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG 160
Query: 123 PSHCRSLRGPQRRSNS 138
P RS RGP RR+ S
Sbjct: 161 PG-TRS-RGPPRRARS 174
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.17
Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 14 PRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQKPGVVHPRPRPI 73
P RP P+ +G +R R P + G+ PT + + G +P P P+
Sbjct: 154 PPRPPPNLQ----EGGQRAIFQRPP-----VYLGNKPTPPRQEGSFGGRPKSQPPLPQET 204
Query: 74 --PRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGP-----LELPGELRALAPSHC 126
P P +P AR PA+ GP + S GP L LPG + AP
Sbjct: 205 AAPAPQPGPTAPPARP--PAYESRE--GPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
Query: 127 RSLRG---------------PQRRSNSSLSVVGARMRECSGVGVFWP--------KCLRI 163
G PQ S + VG R +C G P +C
Sbjct: 261 ELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFC 320
Query: 164 RKRKPSSG 171
R+R+ G
Sbjct: 321 RRRRRRGG 328
Score = 31.6 bits (70), Expect = 0.66
Identities = 57/243 (23%), Positives = 77/243 (31%), Gaps = 51/243 (20%)
Query: 2 GPRVHLQRPPAFPRRPGPHAHTLAT-QGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRG 60
GP RPPA+ R GP + GP +P +P SP + P + + G
Sbjct: 212 GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSP-APPAPELRE-----G 265
Query: 61 QKPGVVHPRPRPIPRNYHPPNSP--------------AARRLVPAFAG----CRV----- 97
+ PG R RP PR A PA +G CR
Sbjct: 266 RAPGSTAGR-RPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
Query: 98 ---AGPSAQLRSAAGGPLELPGE----------LRALAPSHCR---SLRGPQRRSNSSLS 141
G + A GP PG LRA + R L P RR + +L
Sbjct: 325 RRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQ 384
Query: 142 VVGARMRECSGVGVFWPKCLRIRKRKPSSGCTLLVSTLSHKGEPSSGALSRAFKCTKAND 201
G S W R +R +SG ++ S P + + + C
Sbjct: 385 RFGGGRNLKSN----WMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQ 440
Query: 202 TVP 204
VP
Sbjct: 441 VVP 443
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.5 bits (75), Expect = 0.17
Identities = 39/136 (28%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 3 PRVHLQRPPAFPRRPGPHAHTLATQGPRRPRRHRIPNSGLSPFSGDGPTVGQSDSYRGQK 62
P + P + PG A A GP RR +G P GQ ++
Sbjct: 69 PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRR-----------AGHMPASGQVEA----- 112
Query: 63 PGVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALA 122
RN H P A R P F R+ P A S A P LP +
Sbjct: 113 ------------RNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG 160
Query: 123 PSHCRSLRGPQRRSNS 138
P RS RGP RR+ S
Sbjct: 161 PG-TRS-RGPPRRARS 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,601,468
Number of Sequences: 37866
Number of extensions: 726414
Number of successful extensions: 3505
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 3266
Number of HSP's gapped (non-prelim): 540
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.