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Search of human proteins with 169166402
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens] 455 e-128
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 453 e-128
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 453 e-128
gi|162417973 claudin 22 [Homo sapiens] 399 e-112
gi|157820127 claudin-like [Homo sapiens] 229 1e-60
gi|153792768 claudin 6 [Homo sapiens] 131 4e-31
gi|153792186 claudin 7 [Homo sapiens] 129 3e-30
gi|10863887 claudin 1 [Homo sapiens] 126 1e-29
gi|40788011 claudin 8 [Homo sapiens] 126 2e-29
gi|11141861 claudin 9 [Homo sapiens] 124 8e-29
gi|195947374 claudin 5 [Homo sapiens] 119 3e-27
gi|195947372 claudin 5 [Homo sapiens] 119 3e-27
gi|4502877 claudin 4 [Homo sapiens] 118 5e-27
gi|183979973 claudin 19 isoform a [Homo sapiens] 118 5e-27
gi|183979975 claudin 19 isoform b [Homo sapiens] 118 5e-27
gi|4502875 claudin 3 [Homo sapiens] 115 4e-26
gi|225703142 claudin 14 [Homo sapiens] 114 9e-26
gi|21536294 claudin 14 [Homo sapiens] 114 9e-26
gi|225703138 claudin 14 [Homo sapiens] 114 9e-26
gi|6912314 claudin 14 [Homo sapiens] 114 9e-26
gi|225703140 claudin 14 [Homo sapiens] 114 9e-26
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 112 2e-25
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 112 2e-25
gi|6912316 claudin 17 [Homo sapiens] 107 6e-24
gi|9966781 claudin 2 [Homo sapiens] 102 3e-22
gi|5921465 claudin 10 isoform b [Homo sapiens] 100 1e-21
gi|7656981 claudin 15 [Homo sapiens] 97 1e-20
gi|47716519 claudin 20 [Homo sapiens] 83 2e-16
gi|10938016 claudin 11 [Homo sapiens] 75 6e-14
gi|33598916 claudin 10 isoform a [Homo sapiens] 72 3e-13
>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 455 bits (1170), Expect = e-128
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 453 bits (1166), Expect = e-128
Identities = 219/220 (99%), Positives = 219/220 (99%)
Query: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MALIFRTAMQSVGLLLS LGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 453 bits (1166), Expect = e-128
Identities = 219/220 (99%), Positives = 219/220 (99%)
Query: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MALIFRTAMQSVGLLLS LGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
>gi|162417973 claudin 22 [Homo sapiens]
Length = 220
Score = 399 bits (1026), Expect = e-112
Identities = 192/212 (90%), Positives = 198/212 (93%)
Query: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MAL+FRT Q G+ LSLLGW+LS +T YLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASG+TALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLE 212
CLL+CAACSSHAPLA GHYAVAQ Q LE
Sbjct: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELE 212
>gi|157820127 claudin-like [Homo sapiens]
Length = 229
Score = 229 bits (584), Expect = 1e-60
Identities = 108/188 (57%), Positives = 137/188 (72%)
Query: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MA FR +Q GLLLSLLGW+ S +TT LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
Query: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
Query: 181 CLLNCAAC 188
LL +AC
Sbjct: 181 LLLIFSAC 188
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 131 bits (330), Expect = 4e-31
Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 7/212 (3%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTM---GLWQTCVIQEEVGMQCK 65
MQ +G++L+LLGW+ +++ LP WK N + + GLW +CV+Q MQCK
Sbjct: 6 MQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCK 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+DS LALP +L+ +R L ++ + GLLV G C E ++D K RL++ GI+
Sbjct: 66 VYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVE-EKDSKARLVLTSGIV 124
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
SG+ L+PV W AH +++F++ V + R E G +L+LGW A LLLGG LL C
Sbjct: 125 FVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKR-ELGASLYLGWAASGLLLLGGGLL-C 182
Query: 186 AACSSHAPLALGHYAVAQMQTQCPYLEDGTAD 217
C S HY +A+ T P + G ++
Sbjct: 183 CTCPSGGSQGPSHY-MARYSTSAPAISRGPSE 213
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 129 bits (323), Expect = 3e-30
Identities = 66/183 (36%), Positives = 106/183 (57%), Gaps = 4/183 (2%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNL---DLNEMENWTMGLWQTCVIQEEVGMQ 63
+ +Q +G ++LLGW+ + T +P W+ + ++ + GLW CV Q M
Sbjct: 4 SGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMS 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
CK +DS LAL A L+ +R LM +S LGFL + V+ G+ C R G + K R+ + GG
Sbjct: 64 CKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGG 123
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
I+ +G+ ALV SW H+ V +F++ +P + ++EFG A+F+GW ++LGG LL
Sbjct: 124 IIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNI-KYEFGPAIFIGWAGSALVILGGALL 182
Query: 184 NCA 186
+C+
Sbjct: 183 SCS 185
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 126 bits (317), Expect = 1e-29
Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWKNLNL---DLNEMENWTMGLWQTCVIQEEVGMQCK 65
+Q +G +L+ LGWI +I++T LP W+ + ++ + GLW +CV Q +QCK
Sbjct: 6 LQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCK 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
FDS L L + L+ +R LM + LG + + V+ G+ C++ E K R+ ++GG +
Sbjct: 66 VFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAI 125
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
+G+ LV +W ++ VQEF+D P R+EFG+ALF GW A LLGG LL C
Sbjct: 126 FLLAGLAILVATAWYGNRIVQEFYDPMTP-VNARYEFGQALFTGWAAASLCLLGGALLCC 184
Query: 186 A 186
+
Sbjct: 185 S 185
>gi|40788011 claudin 8 [Homo sapiens]
Length = 225
Score = 126 bits (316), Expect = 2e-29
Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 5/216 (2%)
Query: 8 AMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEM---ENWTMGLWQTCVIQEEVGMQC 64
A++ GL L +G + ++ T +P W+ N + EN+ GLW CV Q + MQC
Sbjct: 5 ALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQC 64
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
K +DS LAL +L+ +R LM ++ + FL +++ G+ C R +K +L+ GI
Sbjct: 65 KIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGI 124
Query: 125 LSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLN 184
+ +G+ L+PVSWVA+ +++F++ ++ + + E GEAL+LGW L L++GG L
Sbjct: 125 IFIITGMVVLIPVSWVANAIIRDFYN-SIVNVAQKRELGEALYLGWTTALVLIVGGALFC 183
Query: 185 CAACSSHAPLALGHYAVAQMQTQCPYLEDGTADPQV 220
C C + + + + TQ Y G P V
Sbjct: 184 CVFCCNEKSSSYRYSIPSHRTTQKSY-HTGKKSPSV 218
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 124 bits (310), Expect = 8e-29
Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 5/182 (2%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTM---GLWQTCVIQEEVGMQ 63
T ++ +G+ L++LGW+ ++++ LP WK N + + GLW +CV+Q MQ
Sbjct: 4 TGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
CK +DS LALP +L+ +R L ++ L LGLLV+ G C E + K R+++ G
Sbjct: 64 CKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDE-GAKARIVLTAG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
++ +GI L+PV W AH +Q+F++ V + + R E G +L+LGW A L+LGG LL
Sbjct: 123 VILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKR-ELGASLYLGWAAAALLMLGGGLL 181
Query: 184 NC 185
C
Sbjct: 182 CC 183
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 119 bits (297), Expect = 3e-27
Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Query: 8 AMQSVGLLLSLLGWILSIITTYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
A++ +GL+L L+GW I+ LP W+ LD N + T GLW +CV+Q MQC
Sbjct: 90 ALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQC 149
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
K +DS LAL E++ +R L + L F+ L V+ G C + K R+ + GG+
Sbjct: 150 KVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGGV 208
Query: 125 LSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLN 184
L G+ ALVP+ W A+ V+EF+D +VP ++E G AL++GW A L++GGCLL
Sbjct: 209 LYLFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLLC 267
Query: 185 CAA 187
C A
Sbjct: 268 CGA 270
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 119 bits (297), Expect = 3e-27
Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Query: 8 AMQSVGLLLSLLGWILSIITTYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
A++ +GL+L L+GW I+ LP W+ LD N + T GLW +CV+Q MQC
Sbjct: 90 ALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQC 149
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
K +DS LAL E++ +R L + L F+ L V+ G C + K R+ + GG+
Sbjct: 150 KVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGGV 208
Query: 125 LSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLN 184
L G+ ALVP+ W A+ V+EF+D +VP ++E G AL++GW A L++GGCLL
Sbjct: 209 LYLFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLLC 267
Query: 185 CAA 187
C A
Sbjct: 268 CGA 270
>gi|4502877 claudin 4 [Homo sapiens]
Length = 209
Score = 118 bits (295), Expect = 5e-27
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 5/180 (2%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCK 65
+Q +G+ L++LGW+ ++ LP W+ + N + + T+ GLW CV+Q MQCK
Sbjct: 6 LQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCK 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+DS LALP +L+ +R L+ +S + LG+L+S G C E + K + +I+ G++
Sbjct: 66 VYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDE-SAKAKTMIVAGVV 124
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
+G+ +VPVSW AH +Q+F++ V R E G +L++GW A LLLGG LL C
Sbjct: 125 FLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKR-EMGASLYVGWAASGLLLLGGGLLCC 183
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 118 bits (295), Expect = 5e-27
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWT---MGLWQTCVIQEEVGMQ 63
+ +Q +G L+L GW+ I +T LP WK + + + GLW +C Q +Q
Sbjct: 4 SGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
CK +DS LAL ++ +R LM ++ LGF+ +++S G+ C R+G+S K R+ I GG
Sbjct: 64 CKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGG 123
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ L VSW A QEF++ + P R+EFG ALF+GW + +LGG L
Sbjct: 124 ALFILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFL 182
Query: 184 NCAACSSHAP 193
C P
Sbjct: 183 CCTCPEPERP 192
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 118 bits (295), Expect = 5e-27
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWT---MGLWQTCVIQEEVGMQ 63
+ +Q +G L+L GW+ I +T LP WK + + + GLW +C Q +Q
Sbjct: 4 SGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
CK +DS LAL ++ +R LM ++ LGF+ +++S G+ C R+G+S K R+ I GG
Sbjct: 64 CKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGG 123
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ L VSW A QEF++ + P R+EFG ALF+GW + +LGG L
Sbjct: 124 ALFILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFL 182
Query: 184 NCAACSSHAP 193
C P
Sbjct: 183 CCTCPEPERP 192
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 115 bits (287), Expect = 4e-26
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 5/181 (2%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCK 65
++ G L++LGW+ +I+ LP W+ + ++ +N GLW CV+Q MQCK
Sbjct: 5 LEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQMQCK 64
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+DS LALP +L+ +R L+ ++ L GLLV+ G C + K ++ I+ G+L
Sbjct: 65 VYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDD-TAKAKITIVAGVL 123
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
+ + LVPVSW A+ +++F++ VP+ R E G L++GW A LLGG LL C
Sbjct: 124 FLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKR-EMGAGLYVGWAAAALQLLGGALLCC 182
Query: 186 A 186
+
Sbjct: 183 S 183
>gi|225703142 claudin 14 [Homo sapiens]
Length = 239
Score = 114 bits (284), Expect = 9e-26
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
TA+Q +G LLS LG + ++ITT LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 NCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|21536294 claudin 14 [Homo sapiens]
Length = 239
Score = 114 bits (284), Expect = 9e-26
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
TA+Q +G LLS LG + ++ITT LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 NCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|225703138 claudin 14 [Homo sapiens]
Length = 239
Score = 114 bits (284), Expect = 9e-26
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
TA+Q +G LLS LG + ++ITT LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 NCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|6912314 claudin 14 [Homo sapiens]
Length = 239
Score = 114 bits (284), Expect = 9e-26
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
TA+Q +G LLS LG + ++ITT LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 NCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|225703140 claudin 14 [Homo sapiens]
Length = 239
Score = 114 bits (284), Expect = 9e-26
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
TA+Q +G LLS LG + ++ITT LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 NCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 112 bits (281), Expect = 2e-25
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEME---NWTMGLWQTCVIQEEVGMQ 63
TA Q +G ++SL+G I T + W +L N + N+ GLW++CV + +
Sbjct: 4 TACQGLGFVVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNY-QGLWRSCVRESSGFTE 62
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + + L LPA L+ R LM + LG +GLLVS F L C+RIG + K + + G
Sbjct: 63 CRGYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSG 122
Query: 124 ILSWASGITALVPVSWVAHKTVQEFWDEN----------VPDFVPRWEFGEALFLGWFAG 173
I+ SG+ A+ VS A+ V FW V R+ FG ALF+GW AG
Sbjct: 123 IMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAG 182
Query: 174 LSLLLGGCLLNCAACSSHAPLALGHYAVA 202
L+GG ++ C AC AP + AV+
Sbjct: 183 GLTLIGGVMM-CIACRGLAPEETNYKAVS 210
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 112 bits (280), Expect = 2e-25
Identities = 74/208 (35%), Positives = 103/208 (49%), Gaps = 13/208 (6%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
T Q V LLS+LG I T + W +L N + + GLW++CV Q +C
Sbjct: 4 TTCQVVAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVRQSSGFTEC 63
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
+ + + L LPA L+ R LM + LG +GLLVS F L C+RIG + K + + GI
Sbjct: 64 RPYFTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGI 123
Query: 125 LSWASGITALVPVSWVAHKTVQEFWDEN----------VPDFVPRWEFGEALFLGWFAGL 174
+ SG+ A+ VS A+ V FW V R+ FG ALF+GW AG
Sbjct: 124 MFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGG 183
Query: 175 SLLLGGCLLNCAACSSHAPLALGHYAVA 202
L+GG ++ C AC AP + AV+
Sbjct: 184 LTLIGGVMM-CIACRGLAPEETNYKAVS 210
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 107 bits (268), Expect = 6e-24
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCK 65
+Q GL+L LG + ++ TT LP W+ + ++ E GLW C+ Q V +QCK
Sbjct: 6 LQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCK 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+ S LALP L +R LM ++ L + LL+ G+ ++ S K LL G+L
Sbjct: 66 FYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVL 125
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
+GI L+PVSW A+ +++F++ + + E G ALFLGW + L +GG LL C
Sbjct: 126 FILTGIFVLIPVSWTANIIIRDFYNPAI-HIGQKRELGAALFLGWASAAVLFIGGGLL-C 183
Query: 186 AAC 188
C
Sbjct: 184 GFC 186
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 102 bits (253), Expect = 3e-22
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCK 65
+Q VG +L LLG + +++ LP WK + + ++ GLW C QC
Sbjct: 6 LQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCD 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+ + L LPA+++ ++ +M S+ + L ++S G+ C + R K R+ + GG+
Sbjct: 66 IYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESR-AKDRVAVAGGVF 124
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
G+ +PV+W H +++F+ VPD + ++E GEAL+LG + L L+ G +L C
Sbjct: 125 FILGGLLGFIPVAWNLHGILRDFYSPLVPDSM-KFEIGEALYLGIISSLFSLIAGIIL-C 182
Query: 186 AACSS 190
+CSS
Sbjct: 183 FSCSS 187
>gi|5921465 claudin 10 isoform b [Homo sapiens]
Length = 228
Score = 100 bits (249), Expect = 1e-21
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
TA + + ++S+ GW+L T +WK +D + T LW+ CV C
Sbjct: 4 TASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNC 63
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
KDF S LAL ++ R LM + LGF G + + FG+ C ++G S + K ++ L GI
Sbjct: 64 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKIACLAGI 122
Query: 125 LSWASGITALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALFLGWFAGLSLLLGGCLL 183
+ SG+ ++ S A+K EF+D P FV ++E G ALF+GW AG SL + G ++
Sbjct: 123 VFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALFIGW-AGASLCIIGGVI 178
Query: 184 NCAACSSH 191
C + S +
Sbjct: 179 FCFSISDN 186
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 96.7 bits (239), Expect = 1e-20
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 8 AMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQCK 65
A+++ G ++ +G ++ +T +W+ + N + T+ LW +C C
Sbjct: 4 AVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCW 63
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
+F S LAL ++ R LM + LGFLGLL+ GL C IG + K +L G L
Sbjct: 64 EFPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGAL 123
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG-CLLN 184
+GI +V +SW A ++F+D P ++E G AL+LGW A L +LGG CL +
Sbjct: 124 HILAGICGMVAISWYAFNITRDFFDPLYPG--TKYELGPALYLGWSASLISILGGLCLCS 181
Query: 185 CAACSS 190
C S
Sbjct: 182 ACCCGS 187
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 82.8 bits (203), Expect = 2e-16
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 9 MQSVGLLLSLLGWILSIITTYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCK 65
+Q + +L+L G + T LP+WK N+++D N + GLW C C
Sbjct: 6 LQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCA 65
Query: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K GG+
Sbjct: 66 LKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASFAGGVC 124
Query: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
++GI++L+ W + + F D VP+ + E G A+++G+ + + L + G ++ C
Sbjct: 125 FMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG-MIFC 182
Query: 186 AACSSHAPLA 195
+C P A
Sbjct: 183 TSCIKRNPEA 192
>gi|10938016 claudin 11 [Homo sapiens]
Length = 207
Score = 74.7 bits (182), Expect = 6e-14
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 7 TAMQSVGLLLSLLGWILSIITTYLPHWK-----NLNLDLNEMENWTMGLWQTCVIQEEVG 61
T +Q VG + S +GWI I+TT W + E + GLW CV+ +
Sbjct: 4 TCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGL- 62
Query: 62 MQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLIL 121
CK L LP ++ R LM ++ LG +L+ L C+R+G+ K R L
Sbjct: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
Query: 122 GGILSWASGITALVPVSW---VAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLL 178
G+L + ALV W AH+ FG +L+ GW + L+
Sbjct: 123 AGVLLILLALCALVATIWFPVCAHRETTIV------------SFGYSLYAGWIGAVLCLV 170
Query: 179 GGCLLNCAACSSHA 192
GGC++ C A + A
Sbjct: 171 GGCVILCCAGDAQA 184
>gi|33598916 claudin 10 isoform a [Homo sapiens]
Length = 226
Score = 72.4 bits (176), Expect = 3e-13
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 49 GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108
GLW C C+ + + ++ R LM + LGF G + + FG+ C ++G
Sbjct: 46 GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
Query: 109 ESQRDLKRRLLILGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167
S + K ++ L GI+ SG+ ++ S A+K EF+D P FV ++E G ALF
Sbjct: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
Query: 168 LGWFAGLSLLLGGCLLNCAACSSH 191
+GW AG SL + G ++ C + S +
Sbjct: 162 IGW-AGASLCIIGGVIFCFSISDN 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,387,452
Number of Sequences: 37866
Number of extensions: 348369
Number of successful extensions: 1137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 58
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.