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Search of human proteins with 169163704
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163704 PREDICTED: hypothetical protein [Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163704 PREDICTED: hypothetical protein [Homo sapiens] 588 e-168
gi|169163718 PREDICTED: hypothetical protein [Homo sapiens] 586 e-168
gi|209862789 microtubule associated monoxygenase, calponin and L... 34 0.12
gi|4758666 LATS homolog 1 [Homo sapiens] 32 0.46
gi|24497515 homeobox A3 isoform b [Homo sapiens] 32 0.60
gi|24497513 homeobox A3 isoform a [Homo sapiens] 32 0.60
gi|13562112 homeobox A3 isoform a [Homo sapiens] 32 0.60
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 32 0.60
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 32 0.60
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 32 0.60
gi|47578107 delangin isoform B [Homo sapiens] 32 0.60
gi|47578105 delangin isoform A [Homo sapiens] 32 0.60
gi|151301215 widely-interspaced zinc finger motifs [Homo sapiens] 32 0.60
gi|225690497 tight junction associated protein 1 isoform b [Homo... 32 0.79
gi|225690495 tight junction associated protein 1 isoform b [Homo... 32 0.79
gi|225690493 tight junction associated protein 1 isoform b [Homo... 32 0.79
gi|225690491 tight junction associated protein 1 isoform b [Homo... 32 0.79
gi|225690489 tight junction associated protein 1 isoform a [Homo... 32 0.79
gi|225690487 tight junction associated protein 1 isoform a [Homo... 32 0.79
gi|154277120 spectrin repeat containing, nuclear envelope 1 isof... 31 1.0
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 31 1.0
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 1.0
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 1.0
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 31 1.3
gi|148664218 POU transcription factor [Homo sapiens] 31 1.3
gi|4557853 transcription factor SOX9 [Homo sapiens] 30 1.8
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 1.8
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 1.8
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 30 2.3
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 30 2.3
>gi|169163704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 588 bits (1515), Expect = e-168
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK 60
MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK
Sbjct: 1 MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK 60
Query: 61 KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL 120
KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL
Sbjct: 61 KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL 120
Query: 121 LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN 180
LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN
Sbjct: 121 LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN 180
Query: 181 TCCAKVQRIISGNIIPSVLQKWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT 240
TCCAKVQRIISGNIIPSVLQKWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT
Sbjct: 181 TCCAKVQRIISGNIIPSVLQKWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT 240
Query: 241 DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS 275
DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS
Sbjct: 241 DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS 275
>gi|169163718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 586 bits (1511), Expect = e-168
Identities = 274/275 (99%), Positives = 275/275 (100%)
Query: 1 MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK 60
MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK
Sbjct: 1 MWTEGRQALEEEEGGLPDVEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKK 60
Query: 61 KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL 120
KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL
Sbjct: 61 KTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPAL 120
Query: 121 LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN 180
LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN
Sbjct: 121 LQTLRSLSSCVSGFCFSPLHWHCLAGFLGWKEVCLDAFLVSPSKASQSAYWTTIRDCSIN 180
Query: 181 TCCAKVQRIISGNIIPSVLQKWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT 240
TCCAKVQRIISGNIIPSVL+KWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT
Sbjct: 181 TCCAKVQRIISGNIIPSVLRKWSNFHTQWICHGNTEYVHKSPVGSGKVRNFENASHCLRT 240
Query: 241 DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS 275
DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS
Sbjct: 241 DAAPNSISPWNQHGCRNIFSLPVKDTPQQSGPFRS 275
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 34.3 bits (77), Expect = 0.12
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 45 PKAKAKATAGWRLWKKKTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAG 104
PK K KA A L + I S T ++ +P PP+A S P PP+P
Sbjct: 1204 PKEKPKADAPSDLKAVHSPIRSQPVTLPEA--RTPVSPGSPQPQPPVAASTP--PPSPLP 1259
Query: 105 FKAQPQPSSRSSYPALLQT 123
+QPQPS+ ++ P+ Q+
Sbjct: 1260 ICSQPQPSTEATVPSPTQS 1278
>gi|4758666 LATS homolog 1 [Homo sapiens]
Length = 1130
Score = 32.3 bits (72), Expect = 0.46
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 78 SFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALLQ 122
S E+ VP H PPL S+ YH +P +P S S A +Q
Sbjct: 181 SKESLVPQRHGPPLGESVAYHSESPNSQTDVGRPLSGSGISAFVQ 225
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 32.0 bits (71), Expect = 0.60
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 56 RLWKKKTDISSSAGTFFSGIQKSFEAPVP--------STHSPPLAISIPYHPPNPAGFKA 107
R K K D SG Q +PVP S HS L S+PY P +P F
Sbjct: 84 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSK 141
Query: 108 QPQPS---SRSSYPALLQTLRSLSSC 130
PQ + +SYPA SL SC
Sbjct: 142 PPQGTYGLPPASYPA------SLPSC 161
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 0.60
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 56 RLWKKKTDISSSAGTFFSGIQKSFEAPVP--------STHSPPLAISIPYHPPNPAGFKA 107
R K K D SG Q +PVP S HS L S+PY P +P F
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSK 299
Query: 108 QPQPS---SRSSYPALLQTLRSLSSC 130
PQ + +SYPA SL SC
Sbjct: 300 PPQGTYGLPPASYPA------SLPSC 319
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 0.60
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 56 RLWKKKTDISSSAGTFFSGIQKSFEAPVP--------STHSPPLAISIPYHPPNPAGFKA 107
R K K D SG Q +PVP S HS L S+PY P +P F
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSK 299
Query: 108 QPQPS---SRSSYPALLQTLRSLSSC 130
PQ + +SYPA SL SC
Sbjct: 300 PPQGTYGLPPASYPA------SLPSC 319
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.0 bits (71), Expect = 0.60
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 4 EGRQALEEEEGGLPD----VEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWK 59
E ++A +EEG + + P I +SQ+ + E + KA A A RL +
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLGQ 378
Query: 60 KKTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSS-----R 114
++ AGT AP +PPL P PP P KA P+ +
Sbjct: 379 SQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP---PAAPPLPCAQKAAHPPAGFTKTPK 435
Query: 115 SSYPAL 120
SS PAL
Sbjct: 436 SSSPAL 441
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.0 bits (71), Expect = 0.60
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 4 EGRQALEEEEGGLPD----VEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWK 59
E ++A +EEG + + P I +SQ+ + E + KA A A RL +
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLGQ 378
Query: 60 KKTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSS-----R 114
++ AGT AP +PPL P PP P KA P+ +
Sbjct: 379 SQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP---PAAPPLPCAQKAAHPPAGFTKTPK 435
Query: 115 SSYPAL 120
SS PAL
Sbjct: 436 SSSPAL 441
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 32.0 bits (71), Expect = 0.60
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 4 EGRQALEEEEGGLPD----VEVCPGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWK 59
E ++A +EEG + + P I +SQ+ + E + KA A A RL +
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLGQ 378
Query: 60 KKTDISSSAGTFFSGIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSS-----R 114
++ AGT AP +PPL P PP P KA P+ +
Sbjct: 379 SQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP---PAAPPLPCAQKAAHPPAGFTKTPK 435
Query: 115 SSYPAL 120
SS PAL
Sbjct: 436 SSSPAL 441
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 32.0 bits (71), Expect = 0.60
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 60 KKTDISSSAGTFFSGIQKSF-EAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYP 118
++T IS S + F Q S +P +SP + PY P +PAG+ PSS +++P
Sbjct: 143 QQTTISHSPSSRFVPPQTSSGNRFMPQQNSP---VPSPYAPQSPAGYMPYSHPSSYTTHP 199
Query: 119 ALLQTLRSLSSCVSGFCFSPLHWHCLAG 146
+ Q S+SS + +H + ++G
Sbjct: 200 QMQQA--SVSSPIVAGGLRNIHDNKVSG 225
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 32.0 bits (71), Expect = 0.60
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 60 KKTDISSSAGTFFSGIQKSF-EAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYP 118
++T IS S + F Q S +P +SP + PY P +PAG+ PSS +++P
Sbjct: 143 QQTTISHSPSSRFVPPQTSSGNRFMPQQNSP---VPSPYAPQSPAGYMPYSHPSSYTTHP 199
Query: 119 ALLQTLRSLSSCVSGFCFSPLHWHCLAG 146
+ Q S+SS + +H + ++G
Sbjct: 200 QMQQA--SVSSPIVAGGLRNIHDNKVSG 225
>gi|151301215 widely-interspaced zinc finger motifs [Homo sapiens]
Length = 794
Score = 32.0 bits (71), Expect = 0.60
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 73 SGIQKSFEAPVPST-HSPPLAISIPYHPPNPAGFK--AQPQPSSRSSYPAL 120
+G S EA PS H PLA +P P +P G A P P++R +P L
Sbjct: 260 AGPGSSLEARSPSDLHISPLAKKLPPPPGSPLGHSPTASPPPTARKMFPGL 310
>gi|225690497 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 356 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 401
>gi|225690495 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 356 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 401
>gi|225690493 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 356 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 401
>gi|225690491 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 356 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 401
>gi|225690489 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 366 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 411
>gi|225690487 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 74 GIQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKAQPQPSSRSSYPALL 121
G +++ +PVPST P A + P+H P+PA SS SS LL
Sbjct: 366 GSERARPSPVPST--PASAQASPHHQPSPAPLTLSAPASSASSEEDLL 411
>gi|154277120 spectrin repeat containing, nuclear envelope 1 isoform
3 [Homo sapiens]
Length = 982
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 29 ASSQIQGEWRTECAVGPKAKAKATAGWRLWKKKTD 63
A+ + WR CA+ + + K WRLW+K D
Sbjct: 134 ATRNLDRRWRNICAMSMERRLKIEETWRLWQKFLD 168
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 29 ASSQIQGEWRTECAVGPKAKAKATAGWRLWKKKTD 63
A+ + WR CA+ + + K WRLW+K D
Sbjct: 2496 ATRNLDRRWRNICAMSMERRLKIEETWRLWQKFLD 2530
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 29 ASSQIQGEWRTECAVGPKAKAKATAGWRLWKKKTD 63
A+ + WR CA+ + + K WRLW+K D
Sbjct: 7901 ATRNLDRRWRNICAMSMERRLKIEETWRLWQKFLD 7935
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 29 ASSQIQGEWRTECAVGPKAKAKATAGWRLWKKKTD 63
A+ + WR CA+ + + K WRLW+K D
Sbjct: 7972 ATRNLDRRWRNICAMSMERRLKIEETWRLWQKFLD 8006
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 30.8 bits (68), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 192 GNIIPSVLQKWSNFHTQWICHGNTEYVHKSPV--GSGKVRNFEN 233
G ++PS Q+WS HT++I + + + + P G+ K+ F N
Sbjct: 382 GPMVPSTAQRWSTLHTEYIWY-DPQLTPQPPADYGTAKIHTFPN 424
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 23 PGTGIHASSQIQGEWRTECAVGPKAKAKATAGWRLWKKKT 62
PG+G+HASS + ++ AV + ++ W W T
Sbjct: 394 PGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRWNHST 433
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 51 ATAGWRLWKKKTDISSSAGTFFSG---IQKSFEAPVPSTHSPPLAISIPYHPPNPAGFKA 107
AT G + ISS+A T S +AP P PP A P PP P A
Sbjct: 308 ATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPPQPQA--A 365
Query: 108 QPQPSSRSSYPALLQTLRSLSS 129
PQ + TL +LSS
Sbjct: 366 PPQQPAAPPQQPQAHTLTTLSS 387
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 30.4 bits (67), Expect = 1.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 37 WRTECAVGPKAKAKATAGWRLWKKKTDISSSAGTFFSGIQKSFEAP 82
WR CA+ + + K WRLW+K D S + +++ P
Sbjct: 6117 WRNICAMSMERRMKIEETWRLWQKFLDDYSRFEDWLKSAERTAACP 6162
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 30.4 bits (67), Expect = 1.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 37 WRTECAVGPKAKAKATAGWRLWKKKTDISSSAGTFFSGIQKSFEAP 82
WR CA+ + + K WRLW+K D S + +++ P
Sbjct: 6117 WRNICAMSMERRMKIEETWRLWQKFLDDYSRFEDWLKSAERTAACP 6162
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 30.0 bits (66), Expect = 2.3
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 82 PVPSTHSPPLAISIPYHPPNPAGFKAQPQPSS-------RSSYPALLQTLRSLSSCVSG 133
PVPS H PPL + P P +P S+ R S ALL ++ S S+ G
Sbjct: 342 PVPSPHPPPLPLPPPPPPFSPQSLMVSCMSSNTLSGSTLRGSPNALLSSMTSSSNAALG 400
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 30.0 bits (66), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 211 CHGNTEYVHKSPVG--SGKVRNFENASHCLRTDAAPNSISPWNQHG 254
CH +E H+SP G G+ + S C RT +P+ + P G
Sbjct: 1877 CHSPSERSHRSPSGMRQGRTSERSHRSSCERTRHSPSEMRPGRPSG 1922
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,140,448
Number of Sequences: 37866
Number of extensions: 660529
Number of successful extensions: 2647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2583
Number of HSP's gapped (non-prelim): 100
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.