Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WIZ Sequence: fasta or formatted (794aa) NCBI GI: 151301215
Description:

widely-interspaced zinc finger motifs

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         75           3
 C cysteine            1.6         13           2
 D aspartate           3.1         25           1
 E glutamate           7.8         62           2
 F phenylalanine       3.1         25           2
 G glycine            10.1         80           2
 H histidine           2.4         19           1
 I isoleucine          3.3         26           1
 K lysine              4.9         39           3
 L leucine             8.7         69           2
 M methionine          1.3         10           2
 N asparagine          2.1         17           1
 P proline            12.8        102           4
 Q glutamine           3.4         27           2
 R arginine            8.1         64           2
 S serine              7.6         60           2
 T threonine           4.4         35           1
 V valine              3.7         29           2
 W tryptophan          1.0          8           1
 Y tyrosine            1.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   widely-interspaced zinc finger motifs 
ZNF644                0.022   zinc finger protein 644 isoform 1 
ZNF628                0.022   zinc finger protein 628 
ZNF644                0.021   zinc finger protein 644 isoform 2 
ZNF644                0.021   zinc finger protein 644 isoform 2 
LOC100133142          0.020   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.020   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF668                0.017   zinc finger protein 668 
ZNF219                0.015   zinc finger protein 219 
ZNF219                0.015   zinc finger protein 219 
ZNF219                0.015   zinc finger protein 219 
WNK4                  0.014   WNK lysine deficient protein kinase 4 
KIAA1543              0.014   NEZHA isoform 2 
KIAA1543              0.014   NEZHA isoform 1 
ZFPM1                 0.014   zinc finger protein, multitype 1 
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 
PRR12                 0.013   proline rich 12 
WIPF2                 0.013   WIRE protein 
ASAP1                 0.012   development and differentiation enhancing factor 1 [...
ZNF142                0.012   zinc finger protein 142 
WNK2                  0.012   WNK lysine deficient protein kinase 2 
KLF16                 0.012   BTE-binding protein 4 
MYO15A                0.012   myosin XV 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
VPS37C                0.012   vacuolar protein sorting 37C 
COL17A1               0.011   alpha 1 type XVII collagen 
ZNF775                0.011   zinc finger protein 775 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press