Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TJAP1 Sequence: fasta or formatted (557aa) NCBI GI: 225690489
Description:

tight junction associated protein 1 isoform a

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [557aa] tight junction associated protein 1 isoform a
alt prot [547aa] tight junction associated protein 1 isoform b
alt prot [547aa] tight junction associated protein 1 isoform b
alt prot [547aa] tight junction associated protein 1 isoform b
alt prot [547aa] tight junction associated protein 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         50           2
 C cysteine            1.1          6           1
 D aspartate           3.9         22           1
 E glutamate          11.1         62           4
 F phenylalanine       2.2         12           1
 G glycine             4.3         24           1
 H histidine           3.2         18           2
 I isoleucine          2.2         12           1
 K lysine              4.1         23           2
 L leucine            11.5         64           3
 M methionine          1.1          6           1
 N asparagine          3.4         19           1
 P proline            11.1         62           3
 Q glutamine           4.3         24           1
 R arginine            8.1         45           3
 S serine              9.3         52           3
 T threonine           4.5         25           1
 V valine              3.8         21           2
 W tryptophan          0.7          4           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tight junction associated protein 1 isoform a [Homo... 
TJAP1                 1.000   tight junction associated protein 1 isoform a [Homo...
TJAP1                 0.974   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.974   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.974   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.974   tight junction associated protein 1 isoform b [Homo...
BEGAIN                0.129   brain-enriched guanylate kinase-associated protein ...
BEGAIN                0.129   brain-enriched guanylate kinase-associated protein [...
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
MLL4                  0.023   myeloid/lymphoid or mixed-lineage leukemia 4 
BCL9L                 0.023   B-cell CLL/lymphoma 9-like 
SRRM1                 0.023   serine/arginine repetitive matrix 1 
FSCB                  0.023   fibrous sheath CABYR binding protein 
MLL2                  0.023   myeloid/lymphoid or mixed-lineage leukemia 2 
SNAP91                0.022   synaptosomal-associated protein, 91kDa homolog 
LUZP1                 0.022   leucine zipper protein 1 
LUZP1                 0.022   leucine zipper protein 1 
ROBO3                 0.022   roundabout, axon guidance receptor, homolog 3 
CGNL1                 0.022   cingulin-like 1 
WIPF3                 0.021   WAS/WASL interacting protein family, member 3 [Homo...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 
SRCAP                 0.021   Snf2-related CBP activator protein 
CCDC64B               0.021   coiled-coil domain containing 64B 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press