Guide to the Human Genome
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Name: LOC729312 Sequence: fasta or formatted (275aa) NCBI GI: 169163718
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {275aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         21           2
 C cysteine            4.4         12           2
 D aspartate           2.2          6           1
 E glutamate           4.4         12           4
 F phenylalanine       4.4         12           2
 G glycine             7.3         20           2
 H histidine           3.6         10           1
 I isoleucine          5.5         15           2
 K lysine              5.5         15           3
 L leucine             5.8         16           2
 M methionine          0.4          1           1
 N asparagine          3.6         10           1
 P proline             8.4         23           2
 Q glutamine           4.7         13           2
 R arginine            4.4         12           1
 S serine             12.7         35           3
 T threonine           5.5         15           2
 V valine              4.7         13           1
 W tryptophan          3.6         10           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729312             0.996   PREDICTED: hypothetical protein 
MICAL3                0.016   microtubule associated monoxygenase, calponin and L...
LATS1                 0.012   LATS homolog 1 
HOXA3                 0.012   homeobox A3 isoform b 
HOXA3                 0.012   homeobox A3 isoform a 
HOXA3                 0.012   homeobox A3 isoform a 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: hypothetical protein LOC647024 
NIPBL                 0.012   delangin isoform B 
NIPBL                 0.012   delangin isoform A 
WIZ                   0.012   widely-interspaced zinc finger motifs 
TJAP1                 0.012   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.012   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.012   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.012   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.012   tight junction associated protein 1 isoform a [Homo...
TJAP1                 0.012   tight junction associated protein 1 isoform a [Homo...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
POU2F3                0.011   POU transcription factor 
SOX9                  0.009   transcription factor SOX9 
SYNE2                 0.009   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.009   spectrin repeat containing, nuclear envelope 2 isof...
MAMLD1                0.009   mastermind-like domain containing 1 
C2orf16               0.009   hypothetical protein LOC84226 
DIRC2                 0.009   disrupted in renal carcinoma 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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