Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131354 Sequence: fasta or formatted (392aa) NCBI GI: 169162399
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {382aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         38           3
 C cysteine            2.0          8           1
 D aspartate           3.3         13           1
 E glutamate           3.1         12           2
 F phenylalanine       1.5          6           1
 G glycine            12.0         47           4
 H histidine           1.0          4           1
 I isoleucine          1.5          6           1
 K lysine              3.1         12           2
 L leucine             9.9         39           3
 M methionine          0.8          3           1
 N asparagine          0.8          3           1
 P proline            14.0         55           3
 Q glutamine           4.1         16           4
 R arginine           10.2         40           2
 S serine              8.7         34           2
 T threonine           5.1         20           2
 V valine              4.1         16           2
 W tryptophan          2.3          9           1
 X unknown             1.8          7           7
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131354          0.841   PREDICTED: hypothetical protein 
AGAP2                 0.028   centaurin, gamma 1 isoform PIKE-L 
CNOT3                 0.019   CCR4-NOT transcription complex, subunit 3 
C6orf132              0.019   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.019   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.019   PREDICTED: hypothetical protein LOC647024 
SALL2                 0.019   sal-like 2 
SAMD1                 0.019   sterile alpha motif domain containing 1 
ZFHX4                 0.018   zinc finger homeodomain 4 
C10orf47              0.018   hypothetical protein LOC254427 
FMN1                  0.018   formin 1 
CASKIN1               0.018   CASK interacting protein 1 
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
SFPQ                  0.017   splicing factor proline/glutamine rich (polypyrimidin...
ZBTB4                 0.017   zinc finger and BTB domain containing 4 
ZBTB4                 0.017   zinc finger and BTB domain containing 4 
LOC729580             0.015   PREDICTED: hypothetical protein 
LOC100293055          0.015   PREDICTED: similar to COL22A1 protein 
LOC729580             0.015   PREDICTED: hypothetical protein 
FLJ31945              0.015   PREDICTED: hypothetical protein 
LOC729580             0.015   PREDICTED: hypothetical protein 
FLJ31945              0.015   PREDICTED: hypothetical protein 
GGN                   0.015   gametogenetin 
LOC100132891          0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press