Guide to the Human Genome
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Search of human proteins with 169162520

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162520 PREDICTED: similar to hCG1985805 [Homo sapiens]
         (214 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169162520 PREDICTED: similar to hCG1985805 [Homo sapiens]          425   e-119
gi|169162025 PREDICTED: similar to hCG1985805 [Homo sapiens]          425   e-119
gi|169161196 PREDICTED: similar to hCG1985805 [Homo sapiens]          425   e-119
gi|52351208 solute carrier family 30 (zinc transporter), member ...   124   6e-29
gi|52352803 solute carrier family 30 (zinc transporter), member ...    99   2e-21
gi|21359890 solute carrier family 30 (zinc transporter), member ...    59   3e-09
gi|20070323 solute carrier family 30 (zinc transporter), member ...    59   3e-09
gi|222080086 zinc transporter like 2 [Homo sapiens]                    51   6e-07
gi|40255009 zinc transporter like 2 [Homo sapiens]                     51   6e-07
gi|52352805 solute carrier family 30, member 2 isoform 1 [Homo s...    47   1e-05
gi|64762489 solute carrier family 30 member 8 [Homo sapiens]           44   1e-04
gi|21361112 solute carrier family 30 (zinc transporter), member ...    39   0.004
gi|109150435 ankyrin repeat and zinc finger domain containing 1 ...    32   0.53 
gi|109150425 ankyrin repeat and zinc finger domain containing 1 ...    32   0.53 
gi|122937450 shisa homolog 3 [Homo sapiens]                            29   3.4  
gi|122937273 hypothetical protein LOC131149 [Homo sapiens]             29   3.4  
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    28   4.5  
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    28   4.5  
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    28   4.5  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               28   4.5  
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ...    28   7.6  
gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo ...    28   7.6  
gi|145207958 transmembrane protein 16G isoform NGEP long [Homo s...    27   10.0 

>gi|169162520 PREDICTED: similar to hCG1985805 [Homo sapiens]
          Length = 214

 Score =  425 bits (1093), Expect = e-119
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
           MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60

Query: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
           SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120

Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
           IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180

Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
           ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214


>gi|169162025 PREDICTED: similar to hCG1985805 [Homo sapiens]
          Length = 214

 Score =  425 bits (1093), Expect = e-119
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
           MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60

Query: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
           SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120

Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
           IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180

Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
           ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214


>gi|169161196 PREDICTED: similar to hCG1985805 [Homo sapiens]
          Length = 214

 Score =  425 bits (1093), Expect = e-119
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
           MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60

Query: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
           SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61  SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120

Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
           IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180

Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
           ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214


>gi|52351208 solute carrier family 30 (zinc transporter), member 10
           [Homo sapiens]
          Length = 485

 Score =  124 bits (311), Expect = 6e-29
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF-GVR 59
           MGRYSG++ RL+ M V+++  FV ELV  Y+GNS++L SD+F +LS  +S+ +G   G  
Sbjct: 1   MGRYSGKTCRLLFMLVLTVAFFVAELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYI 60

Query: 60  ASNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAG 119
           A    +   +TYG+ RA+VVGA  N +F  AL F+I VEA+ R   P++ ++P LVL  G
Sbjct: 61  ARRPTRGFSATYGYARAEVVGALSNAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVG 120

Query: 120 IIGLFFNVLNYVIFLDC 136
           ++GL  NV+  +IF DC
Sbjct: 121 VLGLLVNVVGLLIFQDC 137


>gi|52352803 solute carrier family 30 (zinc transporter), member 1
           [Homo sapiens]
          Length = 507

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 49/134 (36%), Positives = 86/134 (64%), Gaps = 1/134 (0%)

Query: 1   MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVR- 59
           MG +     RL+ M  ++ +  V+E+V++ V +SL++ SD+F +LS  +++++     R 
Sbjct: 1   MGCWGRNRGRLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERF 60

Query: 60  ASNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAG 119
           A      +K+T+G++RA+V+GA  N IF   L F+IL+EAI+R+I P + ++P++VL  G
Sbjct: 61  ARRTHATQKNTFGWIRAEVMGALVNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVG 120

Query: 120 IIGLFFNVLNYVIF 133
           + GL  NVL   +F
Sbjct: 121 VAGLLVNVLGLCLF 134


>gi|21359890 solute carrier family 30 (zinc transporter), member 4
           [Homo sapiens]
          Length = 429

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 34/119 (28%), Positives = 64/119 (53%)

Query: 10  RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
           RL +  V+ +L  + ELV  Y+ NSL++ +DA  +L+   ++I+    +  S+    K+ 
Sbjct: 113 RLTIAAVLYLLFMIGELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRF 172

Query: 70  TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNVL 128
           T+GF R +V+ A  + +    LM  +L EA++R I+        ++L    +G+  NV+
Sbjct: 173 TFGFHRLEVLSAMISVLLVYILMGFLLYEAVQRTIHMNYEINGDIMLITAAVGVAVNVI 231


>gi|20070323 solute carrier family 30 (zinc transporter), member 5
           isoform 1 [Homo sapiens]
          Length = 765

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 8   SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
           S ++     +++L   +EL    + NSL L SD F +L    ++++G F    S  K  +
Sbjct: 416 SRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATR 475

Query: 68  KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
             +YG+ R +++  F N +F + + F + +E++ R I+P + +  +L     + GL  N+
Sbjct: 476 IFSYGYGRIEILSGFINGLFLIVIAFFVFMESVARLIDPPELDTHMLT-PVSVGGLIVNL 534

Query: 128 LNYVIFLDCCYCAAPKPQGDMEAS 151
           +    F      A    QG   +S
Sbjct: 535 IGICAFSHAHSHAHGASQGSCHSS 558


>gi|222080086 zinc transporter like 2 [Homo sapiens]
          Length = 376

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 8   SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
           S  L     +++    +EL+     N L L SD+F +     +++ G      S  + + 
Sbjct: 35  SRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDND 94

Query: 68  KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
             +YG++RA+V+  F N +F +   F I  E ++R + P       L+L   I+G   N+
Sbjct: 95  AFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNL 153

Query: 128 LNYVIF 133
           +   +F
Sbjct: 154 IGIFVF 159


>gi|40255009 zinc transporter like 2 [Homo sapiens]
          Length = 376

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 8   SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
           S  L     +++    +EL+     N L L SD+F +     +++ G      S  + + 
Sbjct: 35  SRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDND 94

Query: 68  KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
             +YG++RA+V+  F N +F +   F I  E ++R + P       L+L   I+G   N+
Sbjct: 95  AFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNL 153

Query: 128 LNYVIF 133
           +   +F
Sbjct: 154 IGIFVF 159


>gi|52352805 solute carrier family 30, member 2 isoform 1 [Homo
           sapiens]
          Length = 372

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 25/96 (26%), Positives = 54/96 (56%)

Query: 10  RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
           +L +   + +L  + E+V  Y+ +SL++ +DA  +L+ F SM+I  F +  S+    K  
Sbjct: 73  QLYVASAICLLFMIGEVVGGYLAHSLAVMTDAAHLLTDFASMLISLFSLWMSSRPATKTM 132

Query: 70  TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYIN 105
            +G+ RA+++GA  + +    +   ++  A++R I+
Sbjct: 133 NFGWQRAEILGALVSVLSIWVVTGVLVYLAVERLIS 168


>gi|64762489 solute carrier family 30 member 8 [Homo sapiens]
          Length = 369

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/135 (20%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 4   YSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNI 63
           Y+   ++L     +  +  + E+V  ++  SL++ +DA  +L    S ++  F +  S+ 
Sbjct: 67  YAYAKWKLCSASAICFIFMIAEVVGGHIAGSLAVVTDAAHLLIDLTSFLLSLFSLWLSSK 126

Query: 64  KQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVE-AIKRYINPQKTEEPILVLSAGIIG 122
              K+ T+G+ RA+++GA   +I  + ++  +LV  A +R + P    +  +++      
Sbjct: 127 PPSKRLTFGWHRAEILGAL-LSILCIWVVTGVLVYLACERLLYPDYQIQATVMIIVSSCA 185

Query: 123 LFFNVLNYVIFLDCC 137
           +  N++  V+    C
Sbjct: 186 VAANIVLTVVLHQRC 200


>gi|21361112 solute carrier family 30 (zinc transporter), member 3
           [Homo sapiens]
          Length = 388

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 28/119 (23%), Positives = 55/119 (46%)

Query: 10  RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
           +L   C V  +    E+V  Y+ +SL++ +DA  +L+   SM+   F +  S     +  
Sbjct: 75  QLYAACAVCFVFMAGEVVGGYLAHSLAIMTDAAHLLADVGSMMGSLFSLWLSTRPATRTM 134

Query: 70  TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNVL 128
           T+G+ R++ +GA  + +    +   +L  A  R ++     E   +L    I +  N+L
Sbjct: 135 TFGWHRSETLGALASVVSLWMVTGILLYLAFVRLLHSDYHIEGGAMLLTASIAVCANLL 193


>gi|109150435 ankyrin repeat and zinc finger domain containing 1
           [Homo sapiens]
          Length = 726

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 156 GKKQGKTGLPGAPSHILMFNDQTRNETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
           G  QG     G PSH    N +  NE +L   ++  R   +GPSW K      +I++RA
Sbjct: 243 GTAQGLRDARGGPSHSAGANLRRYNEATL---YKDVRDLLAGPSWAKALEEAGTILLRA 298


>gi|109150425 ankyrin repeat and zinc finger domain containing 1
           [Homo sapiens]
          Length = 726

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 156 GKKQGKTGLPGAPSHILMFNDQTRNETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
           G  QG     G PSH    N +  NE +L   ++  R   +GPSW K      +I++RA
Sbjct: 243 GTAQGLRDARGGPSHSAGANLRRYNEATL---YKDVRDLLAGPSWAKALEEAGTILLRA 298


>gi|122937450 shisa homolog 3 [Homo sapiens]
          Length = 238

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 105 NPQKTEEPILV--LSAGIIGLFFNVLNYVIFLDCCYCAAPK 143
           +P  T +P+ V  L  G I + F +L  V+ + CC C  PK
Sbjct: 87  HPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPK 127


>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
          Length = 477

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 133 FLDCCYCAAPKP--QGDM-EASLKGIGKKQGKTGLPGAP 168
           FL+CC C +P P  +G+  E    G   + G  G+PG P
Sbjct: 98  FLNCCDCCSPVPGQKGEPGETGQPGPKGEAGNLGIPGPP 136


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
           P P G M+ +L G   ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
           P P G M+ +L G   ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
           P P G M+ +L G   ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 144 PQGDMEASLKGIGKKQGKTGLPGAP 168
           P  D E  L G+  K+GK G+PG P
Sbjct: 768 PGSDGERGLPGVPGKRGKMGMPGFP 792


>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
           sapiens]
          Length = 511

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 5   SGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF 56
           S RS  + L CV +IL+  ++LVI+ VG   S++S A A++   +  I+ F+
Sbjct: 413 SVRSALVCLTCVSAILIPRLDLVISLVG---SVSSSALALIIPALLEIVIFY 461


>gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo
           sapiens]
          Length = 470

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 5   SGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF 56
           S RS  + L CV +IL+  ++LVI+ VG   S++S A A++   +  I+ F+
Sbjct: 372 SVRSALVCLTCVSAILIPRLDLVISLVG---SVSSSALALIIPALLEIVIFY 420


>gi|145207958 transmembrane protein 16G isoform NGEP long [Homo
           sapiens]
          Length = 933

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/30 (40%), Positives = 23/30 (76%), Gaps = 2/30 (6%)

Query: 11  LILMCVVSILLF--VMELVIAYVGNSLSLA 38
           +++MC+VSI+L+  +M +V++  GN+L  A
Sbjct: 510 VVVMCLVSIILYRAIMAIVVSRSGNTLLAA 539


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,518,052
Number of Sequences: 37866
Number of extensions: 316580
Number of successful extensions: 1568
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 81
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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