Guide to the Human Genome
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Name: LOC100129376 Sequence: fasta or formatted (216aa) NCBI GI: 169162518
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {216aa} PREDICTED: hypothetical protein
alt mRNA {216aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         27           3
 C cysteine            3.7          8           1
 D aspartate           2.3          5           1
 E glutamate           6.9         15           1
 F phenylalanine       1.9          4           1
 G glycine            16.7         36           3
 H histidine           2.8          6           2
 I isoleucine          0.9          2           1
 K lysine              1.9          4           1
 L leucine             6.0         13           2
 M methionine          1.4          3           1
 N asparagine          1.9          4           1
 P proline             7.4         16           3
 Q glutamine           4.2          9           1
 R arginine           13.9         30           2
 S serine              4.6         10           1
 T threonine           2.3          5           1
 V valine              6.0         13           1
 W tryptophan          1.9          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129376          1.000   PREDICTED: hypothetical protein 
LOC100129376          1.000   PREDICTED: hypothetical protein 
LOC100289978          0.028   PREDICTED: hypothetical protein XP_002348035 
FAM98B                0.028   family with sequence similarity 98, member B isofor...
BPTF                  0.028   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.028   bromodomain PHD finger transcription factor isoform ...
CTAG1B                0.026   cancer/testis antigen 1B 
ABCB10                0.026   ATP-binding cassette, sub-family B, member 10 [Homo...
CTAG1A                0.026   cancer/testis antigen 1A 
RBMXL3                0.023   RNA binding motif protein, X-linked-like 3 
SAFB                  0.023   scaffold attachment factor B 
LOC100291596          0.023   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.023   PREDICTED: hypothetical protein 
LOC100288068          0.023   PREDICTED: hypothetical protein XP_002343259 
MBD2                  0.023   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.023   methyl-CpG binding domain protein 2 isoform 1 
IRS4                  0.023   insulin receptor substrate 4 
LOC100293408          0.023   PREDICTED: hypothetical protein 
LOC338758             0.023   PREDICTED: hypothetical protein 
LOC100289362          0.023   PREDICTED: hypothetical protein 
LOC338758             0.023   PREDICTED: hypothetical protein 
LOC100289362          0.023   PREDICTED: hypothetical protein XP_002343719 
LOC338758             0.023   PREDICTED: hypothetical protein 
CTAG2                 0.021   cancer/testis antigen 2 isoform LAGE-1a 
CTAG2                 0.021   cancer/testis antigen 2 isoform LAGE-1b 
LOC100132369          0.021   PREDICTED: hypothetical protein 
LOC100132369          0.021   PREDICTED: hypothetical protein 
LOC100132369          0.021   PREDICTED: hypothetical protein 
COL13A1               0.019   alpha 1 type XIII collagen isoform 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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