Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169162025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169162025 PREDICTED: similar to hCG1985805 [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169162520 PREDICTED: similar to hCG1985805 [Homo sapiens] 425 e-119
gi|169162025 PREDICTED: similar to hCG1985805 [Homo sapiens] 425 e-119
gi|169161196 PREDICTED: similar to hCG1985805 [Homo sapiens] 425 e-119
gi|52351208 solute carrier family 30 (zinc transporter), member ... 124 6e-29
gi|52352803 solute carrier family 30 (zinc transporter), member ... 99 2e-21
gi|21359890 solute carrier family 30 (zinc transporter), member ... 59 3e-09
gi|20070323 solute carrier family 30 (zinc transporter), member ... 59 3e-09
gi|222080086 zinc transporter like 2 [Homo sapiens] 51 6e-07
gi|40255009 zinc transporter like 2 [Homo sapiens] 51 6e-07
gi|52352805 solute carrier family 30, member 2 isoform 1 [Homo s... 47 1e-05
gi|64762489 solute carrier family 30 member 8 [Homo sapiens] 44 1e-04
gi|21361112 solute carrier family 30 (zinc transporter), member ... 39 0.004
gi|109150435 ankyrin repeat and zinc finger domain containing 1 ... 32 0.53
gi|109150425 ankyrin repeat and zinc finger domain containing 1 ... 32 0.53
gi|122937450 shisa homolog 3 [Homo sapiens] 29 3.4
gi|122937273 hypothetical protein LOC131149 [Homo sapiens] 29 3.4
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 28 4.5
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 28 4.5
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 28 4.5
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 28 4.5
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 28 7.6
gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo ... 28 7.6
gi|145207958 transmembrane protein 16G isoform NGEP long [Homo s... 27 10.0
>gi|169162520 PREDICTED: similar to hCG1985805 [Homo sapiens]
Length = 214
Score = 425 bits (1093), Expect = e-119
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
Query: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
>gi|169162025 PREDICTED: similar to hCG1985805 [Homo sapiens]
Length = 214
Score = 425 bits (1093), Expect = e-119
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
Query: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
>gi|169161196 PREDICTED: similar to hCG1985805 [Homo sapiens]
Length = 214
Score = 425 bits (1093), Expect = e-119
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA
Sbjct: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRA 60
Query: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI
Sbjct: 61 SNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGI 120
Query: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN
Sbjct: 121 IGLFFNVLNYVIFLDCCYCAAPKPQGDMEASLKGIGKKQGKTGLPGAPSHILMFNDQTRN 180
Query: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA
Sbjct: 181 ETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
>gi|52351208 solute carrier family 30 (zinc transporter), member 10
[Homo sapiens]
Length = 485
Score = 124 bits (311), Expect = 6e-29
Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF-GVR 59
MGRYSG++ RL+ M V+++ FV ELV Y+GNS++L SD+F +LS +S+ +G G
Sbjct: 1 MGRYSGKTCRLLFMLVLTVAFFVAELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYI 60
Query: 60 ASNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAG 119
A + +TYG+ RA+VVGA N +F AL F+I VEA+ R P++ ++P LVL G
Sbjct: 61 ARRPTRGFSATYGYARAEVVGALSNAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVG 120
Query: 120 IIGLFFNVLNYVIFLDC 136
++GL NV+ +IF DC
Sbjct: 121 VLGLLVNVVGLLIFQDC 137
>gi|52352803 solute carrier family 30 (zinc transporter), member 1
[Homo sapiens]
Length = 507
Score = 99.4 bits (246), Expect = 2e-21
Identities = 49/134 (36%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 1 MGRYSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVR- 59
MG + RL+ M ++ + V+E+V++ V +SL++ SD+F +LS +++++ R
Sbjct: 1 MGCWGRNRGRLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERF 60
Query: 60 ASNIKQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAG 119
A +K+T+G++RA+V+GA N IF L F+IL+EAI+R+I P + ++P++VL G
Sbjct: 61 ARRTHATQKNTFGWIRAEVMGALVNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVG 120
Query: 120 IIGLFFNVLNYVIF 133
+ GL NVL +F
Sbjct: 121 VAGLLVNVLGLCLF 134
>gi|21359890 solute carrier family 30 (zinc transporter), member 4
[Homo sapiens]
Length = 429
Score = 58.9 bits (141), Expect = 3e-09
Identities = 34/119 (28%), Positives = 64/119 (53%)
Query: 10 RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
RL + V+ +L + ELV Y+ NSL++ +DA +L+ ++I+ + S+ K+
Sbjct: 113 RLTIAAVLYLLFMIGELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRF 172
Query: 70 TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNVL 128
T+GF R +V+ A + + LM +L EA++R I+ ++L +G+ NV+
Sbjct: 173 TFGFHRLEVLSAMISVLLVYILMGFLLYEAVQRTIHMNYEINGDIMLITAAVGVAVNVI 231
>gi|20070323 solute carrier family 30 (zinc transporter), member 5
isoform 1 [Homo sapiens]
Length = 765
Score = 58.9 bits (141), Expect = 3e-09
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 8 SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
S ++ +++L +EL + NSL L SD F +L ++++G F S K +
Sbjct: 416 SRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATR 475
Query: 68 KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
+YG+ R +++ F N +F + + F + +E++ R I+P + + +L + GL N+
Sbjct: 476 IFSYGYGRIEILSGFINGLFLIVIAFFVFMESVARLIDPPELDTHMLT-PVSVGGLIVNL 534
Query: 128 LNYVIFLDCCYCAAPKPQGDMEAS 151
+ F A QG +S
Sbjct: 535 IGICAFSHAHSHAHGASQGSCHSS 558
>gi|222080086 zinc transporter like 2 [Homo sapiens]
Length = 376
Score = 51.2 bits (121), Expect = 6e-07
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 8 SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
S L +++ +EL+ N L L SD+F + +++ G S + +
Sbjct: 35 SRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDND 94
Query: 68 KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
+YG++RA+V+ F N +F + F I E ++R + P L+L I+G N+
Sbjct: 95 AFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNL 153
Query: 128 LNYVIF 133
+ +F
Sbjct: 154 IGIFVF 159
>gi|40255009 zinc transporter like 2 [Homo sapiens]
Length = 376
Score = 51.2 bits (121), Expect = 6e-07
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 8 SFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHK 67
S L +++ +EL+ N L L SD+F + +++ G S + +
Sbjct: 35 SRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDND 94
Query: 68 KSTYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNV 127
+YG++RA+V+ F N +F + F I E ++R + P L+L I+G N+
Sbjct: 95 AFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNL 153
Query: 128 LNYVIF 133
+ +F
Sbjct: 154 IGIFVF 159
>gi|52352805 solute carrier family 30, member 2 isoform 1 [Homo
sapiens]
Length = 372
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/96 (26%), Positives = 54/96 (56%)
Query: 10 RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
+L + + +L + E+V Y+ +SL++ +DA +L+ F SM+I F + S+ K
Sbjct: 73 QLYVASAICLLFMIGEVVGGYLAHSLAVMTDAAHLLTDFASMLISLFSLWMSSRPATKTM 132
Query: 70 TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYIN 105
+G+ RA+++GA + + + ++ A++R I+
Sbjct: 133 NFGWQRAEILGALVSVLSIWVVTGVLVYLAVERLIS 168
>gi|64762489 solute carrier family 30 member 8 [Homo sapiens]
Length = 369
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/135 (20%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 4 YSGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNI 63
Y+ ++L + + + E+V ++ SL++ +DA +L S ++ F + S+
Sbjct: 67 YAYAKWKLCSASAICFIFMIAEVVGGHIAGSLAVVTDAAHLLIDLTSFLLSLFSLWLSSK 126
Query: 64 KQHKKSTYGFLRADVVGAFGNTIFAVALMFSILVE-AIKRYINPQKTEEPILVLSAGIIG 122
K+ T+G+ RA+++GA +I + ++ +LV A +R + P + +++
Sbjct: 127 PPSKRLTFGWHRAEILGAL-LSILCIWVVTGVLVYLACERLLYPDYQIQATVMIIVSSCA 185
Query: 123 LFFNVLNYVIFLDCC 137
+ N++ V+ C
Sbjct: 186 VAANIVLTVVLHQRC 200
>gi|21361112 solute carrier family 30 (zinc transporter), member 3
[Homo sapiens]
Length = 388
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 10 RLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFFGVRASNIKQHKKS 69
+L C V + E+V Y+ +SL++ +DA +L+ SM+ F + S +
Sbjct: 75 QLYAACAVCFVFMAGEVVGGYLAHSLAIMTDAAHLLADVGSMMGSLFSLWLSTRPATRTM 134
Query: 70 TYGFLRADVVGAFGNTIFAVALMFSILVEAIKRYINPQKTEEPILVLSAGIIGLFFNVL 128
T+G+ R++ +GA + + + +L A R ++ E +L I + N+L
Sbjct: 135 TFGWHRSETLGALASVVSLWMVTGILLYLAFVRLLHSDYHIEGGAMLLTASIAVCANLL 193
>gi|109150435 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 156 GKKQGKTGLPGAPSHILMFNDQTRNETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
G QG G PSH N + NE +L ++ R +GPSW K +I++RA
Sbjct: 243 GTAQGLRDARGGPSHSAGANLRRYNEATL---YKDVRDLLAGPSWAKALEEAGTILLRA 298
>gi|109150425 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 156 GKKQGKTGLPGAPSHILMFNDQTRNETSLPGSFEKFRKKNSGPSWVKCPSLEPSIVIRA 214
G QG G PSH N + NE +L ++ R +GPSW K +I++RA
Sbjct: 243 GTAQGLRDARGGPSHSAGANLRRYNEATL---YKDVRDLLAGPSWAKALEEAGTILLRA 298
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 105 NPQKTEEPILV--LSAGIIGLFFNVLNYVIFLDCCYCAAPK 143
+P T +P+ V L G I + F +L V+ + CC C PK
Sbjct: 87 HPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPK 127
>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
Length = 477
Score = 28.9 bits (63), Expect = 3.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 133 FLDCCYCAAPKP--QGDM-EASLKGIGKKQGKTGLPGAP 168
FL+CC C +P P +G+ E G + G G+PG P
Sbjct: 98 FLNCCDCCSPVPGQKGEPGETGQPGPKGEAGNLGIPGPP 136
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 28.5 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
P P G M+ +L G ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 28.5 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
P P G M+ +L G ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 28.5 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 142 PKPQGDMEASLKGIGKKQGKTGLPGAP 168
P P G M+ +L G ++G+ GLPG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 28.5 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 144 PQGDMEASLKGIGKKQGKTGLPGAP 168
P D E L G+ K+GK G+PG P
Sbjct: 768 PGSDGERGLPGVPGKRGKMGMPGFP 792
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 27.7 bits (60), Expect = 7.6
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 5 SGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF 56
S RS + L CV +IL+ ++LVI+ VG S++S A A++ + I+ F+
Sbjct: 413 SVRSALVCLTCVSAILIPRLDLVISLVG---SVSSSALALIIPALLEIVIFY 461
>gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo
sapiens]
Length = 470
Score = 27.7 bits (60), Expect = 7.6
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 5 SGRSFRLILMCVVSILLFVMELVIAYVGNSLSLASDAFAVLSHFVSMIIGFF 56
S RS + L CV +IL+ ++LVI+ VG S++S A A++ + I+ F+
Sbjct: 372 SVRSALVCLTCVSAILIPRLDLVISLVG---SVSSSALALIIPALLEIVIFY 420
>gi|145207958 transmembrane protein 16G isoform NGEP long [Homo
sapiens]
Length = 933
Score = 27.3 bits (59), Expect = 10.0
Identities = 12/30 (40%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 11 LILMCVVSILLF--VMELVIAYVGNSLSLA 38
+++MC+VSI+L+ +M +V++ GN+L A
Sbjct: 510 VVVMCLVSIILYRAIMAIVVSRSGNTLLAA 539
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,518,052
Number of Sequences: 37866
Number of extensions: 316580
Number of successful extensions: 1568
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 81
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.