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Search of human proteins with 169161980
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 380 e-106
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 376 e-105
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 335 1e-92
gi|148612890 serine-arginine repressor protein [Homo sapiens] 214 3e-56
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 99 2e-21
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 94 8e-20
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 91 7e-19
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 89 2e-18
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 83 1e-16
gi|9558733 transformer-2 alpha [Homo sapiens] 75 2e-14
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 73 2e-13
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 72 3e-13
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 61 6e-10
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens] 61 6e-10
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens] 61 6e-10
gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens] 59 2e-09
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 56 1e-08
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 56 1e-08
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 56 2e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 56 2e-08
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 56 2e-08
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 56 2e-08
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 55 3e-08
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 55 3e-08
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 55 3e-08
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 55 3e-08
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 55 4e-08
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 380 bits (977), Expect = e-106
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
SRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
Query: 181 K 181
K
Sbjct: 181 K 181
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 376 bits (965), Expect = e-105
Identities = 181/182 (99%), Positives = 181/182 (99%), Gaps = 1/182 (0%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 179
SRSYERRRSRSRSFDYNYRRSYSPRN RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
Query: 180 RK 181
RK
Sbjct: 181 RK 182
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 335 bits (860), Expect = 1e-92
Identities = 163/164 (99%), Positives = 163/164 (99%), Gaps = 1/164 (0%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDR 163
SRSYERRRSRSRSFDYNYRRSYSPRN RPTGRPRRSRSHSDNDR
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 87 QGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRS 141
+G KT ++ K G SR + R +S+SRS R RS+SRS + +S
Sbjct: 206 RGTSKTDSKTHYKSGSRYEKESRKKEPPR-SKSQSRSQSRSRSKSRSRSWTSPKS 259
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 214 bits (545), Expect = 3e-56
Identities = 117/184 (63%), Positives = 133/184 (72%), Gaps = 20/184 (10%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRY RPPNTSLF+RNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE R+ S S +RRSR
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPS------DHRRSR 113
Query: 121 SRSYERRRSRSRSFDYNYRRSYS-------------PRNRPTGRPRRSRSHSDNDRPNCS 167
S S R RSRS S+ N RRS S ++R PRRS S + P +
Sbjct: 114 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN 173
Query: 168 WNTQ 171
+ ++
Sbjct: 174 FGSR 177
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 99.4 bits (246), Expect = 2e-21
Identities = 70/191 (36%), Positives = 95/191 (49%), Gaps = 31/191 (16%)
Query: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 59 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDR-------------------------KTP 93
D RDAEDA+ +D + GR++ +Q A+ R ++P
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 122
Query: 94 NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPR 153
+ + R+ S SR RY RS+SRS R RSRS S + RRS S + +
Sbjct: 123 RRRRRSRSRS-RSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Query: 154 RSRSHSDNDRP 164
RSRS S + P
Sbjct: 182 RSRSRSRSRSP 192
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 93.6 bits (231), Expect = 8e-20
Identities = 66/173 (38%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 1 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQG-------DRK------TPNQMKAKEGRNVYS 106
D RDAEDA+ LD K ICG ++ ++ + G DR PN + G +
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
Query: 107 SSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHS 159
+ Y R RRSRSRS RSR R + + RS R+R + PRRSRS S
Sbjct: 116 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR-SASPRRSRSIS 167
Score = 33.5 bits (75), Expect = 0.10
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 108 SRYDDYDRYRRSRSRSYER-RRSRSRSFDYNYRRSYSPRNRPTGRPRRSRS 157
SRY RSRSRS R R SRS+S + +RS S P+G PRRS S
Sbjct: 187 SRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRS----PSGSPRRSAS 233
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 90.5 bits (223), Expect = 7e-19
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
+L V N+ T + LRR F +YG + DVY+P + +T+ PRGFA+V+F D RDA+DA
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 71 LDRKWICGRQIEIQFAQ-GDRKTPNQMKAKE---------GRNVYSSSRYDDYDRYR-RS 119
+D + GR++ +Q A+ G R P + + GR S R R R RS
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
Query: 120 RSRSYERRRSRSRSFDYNYRRSYSPRNR-PTGRPRRSRSHSDNDRPNCSWNTQYSSAYYT 178
RSR RSRSRS R S SP +R P R R SRS R ++Y ++Y+
Sbjct: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR---ESRYGGSHYS 191
Query: 179 S 179
S
Sbjct: 192 S 192
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 21/89 (23%)
Query: 97 KAKEGRNVYSSSRYDD--YDRYRRSR----------------SRSYERRRSRSRSFDYNY 138
+++ G + YSSS Y + Y RY SR S+S RRS+S S +
Sbjct: 182 ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSR 241
Query: 139 RRSYS---PRNRPTGRPRRSRSHSDNDRP 164
RS S R+ P R+S+S S + RP
Sbjct: 242 SRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 89.0 bits (219), Expect = 2e-18
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDY------D 114
RDA DA+ LD + +CG ++ ++ + G++++ N+ + DDY
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPS----WGRRPRDDYRRRSPPP 111
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYS--PRNRPTGRPRRSRSHS-DNDR 163
R R R RS+ R RSRS S D RS S ++P+ RSRS S N+R
Sbjct: 112 RRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 82.8 bits (203), Expect = 1e-16
Identities = 64/173 (36%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
PN L V ++ T DLR F +YGPI DV + D +RR RGFA+V FE+V DA++A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
+ + GR+I + F+ R GR Y SSR DY Y R R Y+ R
Sbjct: 176 KERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY--YDRGYDRGYDDR 233
Query: 128 RSRSRSF----------------DYNY-RRSYSPRNRPTGRPRRSRSHSDNDR 163
SRS+ D Y RRS SP G RSRS S + R
Sbjct: 234 DYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
Score = 55.1 bits (131), Expect = 3e-08
Identities = 33/87 (37%), Positives = 42/87 (48%)
Query: 94 NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPR 153
++ K++ S SR Y RSRSRS RRSRSRS+ +YRR +S + P R
Sbjct: 46 SRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRR 105
Query: 154 RSRSHSDNDRPNCSWNTQYSSAYYTSR 180
R + N PNC S Y T R
Sbjct: 106 RHVGNRANPDPNCCLGVFGLSLYTTER 132
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 75.5 bits (184), Expect = 2e-14
Identities = 62/176 (35%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 2 SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61
SR PNT L V ++ T DLR F RYGP+ V V D T R RGFA+V FE +
Sbjct: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
Query: 62 RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-------------- 107
D+++A+ + + GR+I + ++ R GR +S
Sbjct: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
Query: 108 ----------------SRYDDYD-RY-RRSRSRSYERRRSRSRSFDYNYRRSYSPR 145
RY+DYD RY RRS S Y R RSRSRS RSYSPR
Sbjct: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS------RSYSPR 280
Score = 48.1 bits (113), Expect = 4e-06
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 106 SSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRP 164
S SR + RY RSRS S+ RRRSRSRS+ YRR S + P RR N P
Sbjct: 58 SRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDP 117
Query: 165 NCSWNTQYSSAYYTSR 180
N S Y T R
Sbjct: 118 NTCLGVFGLSLYTTER 133
Score = 35.4 bits (80), Expect = 0.027
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 92 TPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRR-------SYSP 144
TP ++K++ S SR + S S S R +SRSRS +++RR S+S
Sbjct: 24 TPARVKSESRSGSRSPSRVS-----KHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSH 78
Query: 145 RNR-------PTGRPRRSRSHS 159
R R P R RRSRSHS
Sbjct: 79 RRRSRSRSYTPEYRRRRSRSHS 100
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 72.8 bits (177), Expect = 2e-13
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFV ++ DT + L + F +YG I +V V D T+R RGF +V FE++ DA+DA+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK-----AKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
+ K + GRQI + Q + + N+ + + GR + R R R Y
Sbjct: 68 NGKSVDGRQIRVD--QAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 127 RRSRSRSFDYNYRRS-YSPRNRPTGRPRRSRSHSDND 162
R SRS Y R YS R++ G RS S D
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 71.6 bits (174), Expect = 3e-13
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
+LFV V DT LRREF YGPI +++ + +PRG+A++++E RD A +
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 71 LDRKWICGRQIEIQFAQGDRK---TPNQMKAKEGR--------NVYSSSRYDDYDRY--- 116
D K I GR++ + +G P ++ G N+ S R DD RY
Sbjct: 164 ADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR-DDTSRYDER 222
Query: 117 -------RRSRSRSYER-RRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDR 163
R R R ER RR RSR D R R+R R RRSRS +R
Sbjct: 223 PGPSPLPHRDRDRDRERERRERSRERDKERERR---RSRSRDRRRRSRSRDKEER 274
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 89 DRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSR--SYERRRSRSRSFDYNY-RRSYSPR 145
DR+ + +++E R DR RRSRSR ERRRSR RS D + R+ S R
Sbjct: 236 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE-ERRRSRERSKDKDRDRKRRSSR 294
Query: 146 NRPTGRPRRSR 156
+R R R R
Sbjct: 295 SRERARRERER 305
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 60.8 bits (146), Expect = 6e-10
Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+++ ++ + R +D++R F YG +++V + G+ +V+FED RDA+DA++ L
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK--------NGYGFVEFEDSRDADDAVYEL 55
Query: 72 DRKWICGRQIEIQFAQGDRKTPN--QMKAKEGRNVYSSSRYDDYDRY 116
+ K +CG ++ ++ A+G R+ + ++ G YSS R D+Y
Sbjct: 56 NGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKY 102
Score = 44.7 bits (104), Expect = 4e-05
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR 115
++F D + AL LD I GR I + D+ + ++ G S SR R
Sbjct: 151 IEFRSYSDMKRALDKLDGTEINGRNIRLI---EDKPRTSHRRSYSGSRSRSRSRRRSRSR 207
Query: 116 YRRS---RSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHS--DNDRPNCSWNT 170
RRS RSRS + RSRSRS R R+R GR RS+S S +DR + S +
Sbjct: 208 SRRSSRSRSRSISKSRSRSRS-----RSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSR 262
Query: 171 QYSSAYY 177
S Y
Sbjct: 263 SRSKDEY 269
Score = 31.6 bits (70), Expect = 0.39
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 91 KTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS-------RSRSFDYNYRRSYS 143
++ ++ K K R +S SR D Y +SRSRS R +S+S + RS S
Sbjct: 244 RSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNS 303
Query: 144 PRNRPTGRPR 153
P P + R
Sbjct: 304 PLPVPPSKAR 313
>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
Length = 296
Score = 60.8 bits (146), Expect = 6e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
L+V +A++ + L F +G I D+ +PLD+ T + RGFA+V+FE DA A+ N+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ + GR I + A+ P ++K R V+S D D ++ ++ E +
Sbjct: 68 NESELFGRTIRVNLAK-----PMRIKEGSSRPVWS-----DDDWLKKFSGKTLEENKEEE 117
Query: 132 RS 133
S
Sbjct: 118 GS 119
>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
Length = 301
Score = 60.8 bits (146), Expect = 6e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
L+V +A++ + L F +G I D+ +PLD+ T + RGFA+V+FE DA A+ N+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ + GR I + A+ P ++K R V+S D D ++ ++ E +
Sbjct: 68 NESELFGRTIRVNLAK-----PMRIKEGSSRPVWS-----DDDWLKKFSGKTLEENKEEE 117
Query: 132 RS 133
S
Sbjct: 118 GS 119
>gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]
Length = 492
Score = 59.3 bits (142), Expect = 2e-09
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 5 LRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
++PP LFV + T EDL F R+GPI V D+ T +A+++FE D
Sbjct: 235 IKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDC 294
Query: 65 EDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR 115
E A +D I R+I + F+Q K + K K G+ Y+ S + +Y++
Sbjct: 295 EKAFFKMDNVLIDDRRIHVDFSQSVAKV--KWKGKGGK--YTKSDFKEYEK 341
Score = 26.9 bits (58), Expect = 9.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 94 NQMKAKEGRNVYSSSRYDDY--DRYRRSRSRSYERRRSRSRSFD 135
++ +++E YS+S Y D Y R RS+ +R RS +S D
Sbjct: 442 SRSRSRERDGHYSNSHKSKYQTDLYERERSKKRDRSRSPKKSKD 485
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.046
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.046
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.046
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 56.2 bits (134), Expect = 1e-08
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+++ ++ R D+ R F YG I++V + G+ +V+F+D+RDA+DA++ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK--------NGYGFVEFDDLRDADDAVYEL 55
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSR 122
+ K +CG ++ ++ A+G R+ + + G Y S D Y R+ R
Sbjct: 56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYG-YRRSGRDKYGPPTRTEYR 105
Score = 48.1 bits (113), Expect = 4e-06
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 3 RYLRPPNTS--LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
+Y P T L V N++ +DL+ + G + D + R + ++F
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA----DAHKGR-KNEGVIEFVS 149
Query: 61 VRDAEDALHNLDRKWICGRQIE-IQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYR-- 117
D + AL LD + GR+I ++ G R+ + +++ S SR+ R R
Sbjct: 150 YSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSG 209
Query: 118 ---------RSRSRSYERRRSRSRSFDYNYRRSYSPRNR-PTGRPRRSRSHS 159
RSRSRS R RS+SRS + RS ++R P+ RSRSHS
Sbjct: 210 SSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHS 261
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 90 RKTPNQMKAKEGRNVYSSSRYDDYDRYR-RSRSRSYERRRSRSRSFDYNYRRSYSPRNRP 148
R++ ++ ++K G S SR D+ + R RSR R RSRSRS R+ S R+
Sbjct: 328 RQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSK 387
Query: 149 TGRPRRSRSHSDNDR 163
G ++ + D DR
Sbjct: 388 AGSSKKKKK-EDTDR 401
Score = 29.6 bits (65), Expect = 1.5
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 91 KTPNQMKAK-EGRNVYSSSRYDDYDRYRRSRSRSYERR----RSRSRSFDYNYRRSYS-- 143
++P++ K+K + R+ R ++ R SR RS E+ RSRSRS + RS S
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRS 348
Query: 144 -PRNRPTGRPR-------RSRSHSDNDRPNCSWNTQYSSAYYTSRK 181
+++ GR R RSRS S ++R + + S A + +K
Sbjct: 349 KSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKK 394
Score = 28.9 bits (63), Expect = 2.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 86 AQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYR-RSRSRSYERRRSRSRSFDYNYRRSYSP 144
++ RK ++ +K G + + +D DR + RS SRS + R ++S
Sbjct: 374 SERSRKRGSKRDSKAGSS--KKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGES 431
Query: 145 RNRPTGRPRRSRSHSDN-DRPN 165
N T + RSRS S++ +PN
Sbjct: 432 ENAGTNQETRSRSRSNSKSKPN 453
Score = 28.1 bits (61), Expect = 4.3
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 87 QGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRN 146
+G+ + + R+ +S + RSRS+S + RSRS+S RS S
Sbjct: 428 RGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKS------RSRSASR 481
Query: 147 RPTGRPRRSRSHS 159
P+ RSRSHS
Sbjct: 482 SPS--RSRSRSHS 492
Score = 27.7 bits (60), Expect = 5.6
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYS--------PRNRPTGRPRRSRS 157
S SR R ++ +SRS + +SRSRS RS S N G+P +SRS
Sbjct: 232 SRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKP-KSRS 290
Query: 158 HS 159
S
Sbjct: 291 PS 292
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 56.2 bits (134), Expect = 1e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
Score = 27.7 bits (60), Expect = 5.6
Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 22/73 (30%)
Query: 107 SSRYDDY-----------DRYRRSRSRSYERRRSR----SRSFDYNYRRSYSPRNRPTGR 151
SSRYDDY D Y SRS Y R R R + R Y P
Sbjct: 307 SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPP------- 359
Query: 152 PRRSRSHSDNDRP 164
PR S S S P
Sbjct: 360 PRDSYSSSSRGAP 372
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 13 FVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
F+ + +T + L FG+YG IV+V++ D T + RGFA++ FE DA+DA +++
Sbjct: 11 FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
Query: 73 RKWICGRQIEIQ------FAQGDRKTPNQMKAKEGRNVYSSSR 109
K + G+ I+++ F G R P +++ V R
Sbjct: 71 GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGR 113
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 13 FVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
F+ + +T + L FG+YG IV+V++ D T + RGFA++ FE DA+DA +++
Sbjct: 11 FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
Query: 73 RKWICGRQIEIQ------FAQGDRKTPNQMKAKEGRNVYSSSR 109
K + G+ I+++ F G R P +++ V R
Sbjct: 71 GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGR 113
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 55.5 bits (132), Expect = 3e-08
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + T + L+ EFG+YG I+ V++ D T + RGFA+V FE DA+ A ++
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ K++ G+ I M A+ + + SSR+ SRSR R R
Sbjct: 70 NGKYLDGKAI--------------MVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGG 115
Query: 132 RSFDYNYRRSYSPRNRPT-GRPRRSRSHS 159
SP+ P+ GRP R ++
Sbjct: 116 S----------SPQRPPSQGRPDDGRGYA 134
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 55.5 bits (132), Expect = 3e-08
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 21/115 (18%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+F+ + R +D+ R F YG I D+ + RGF +V+FED RDA+DA++ L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
D K +C ++ I+ A+ + + GR YS DR+ R R+ R
Sbjct: 58 DGKELCSERVTIEHARA------RSRGGRGRGRYS-------DRFSSRRPRNDRR 99
Score = 47.4 bits (111), Expect = 7e-06
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-SRYDDYD 114
V+F D ++A+ L K I GR+I++ +G ++ R SS SR
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL--IEGSKRHSRSRSRSRSRTRSSSRSRSRSRS 206
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYSP-RNRPTGRPRRSRSHSDNDR 163
R R+S SRS R RSRSRS + RS P +++ G RS+S + DR
Sbjct: 207 RSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR 256
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 55.5 bits (132), Expect = 3e-08
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 21/115 (18%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+F+ + R +D+ R F YG I D+ + RGF +V+FED RDA+DA++ L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
D K +C ++ I+ A+ + + GR YS DR+ R R+ R
Sbjct: 58 DGKELCSERVTIEHARA------RSRGGRGRGRYS-------DRFSSRRPRNDRR 99
Score = 47.4 bits (111), Expect = 7e-06
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-SRYDDYD 114
V+F D ++A+ L K I GR+I++ +G ++ R SS SR
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL--IEGSKRHSRSRSRSRSRTRSSSRSRSRSRS 206
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYSP-RNRPTGRPRRSRSHSDNDR 163
R R+S SRS R RSRSRS + RS P +++ G RS+S + DR
Sbjct: 207 RSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR 256
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 55.1 bits (131), Expect = 3e-08
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
P SL+V ++ D L +F GPI+ + V D TRR G+AY+ F+ DAE A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYD 114
L ++ + + G+ I I ++Q D P K+ G N++ + D D
Sbjct: 69 LDTMNFEMLKGQPIRIMWSQRD---PGLRKSGVG-NIFIKNLEDSID 111
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
++F++N+ D ++ L F +G I+ V D + R GF +V FE A+ A++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINT 157
Query: 71 LDRKWICGRQIEIQFAQGDRKTPNQM--KAKEGRNVYSSSRYDDYD 114
++ + R++ + + R+ ++ +A E N+Y + D D
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 3 RYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
R R +L+V+N+ D + LR+EF YG I V + +GF +V F
Sbjct: 287 RLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPE 344
Query: 63 DAEDALHNLDRKWICGRQIEIQFAQ 87
+A A+ ++ + + + + + AQ
Sbjct: 345 EATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 54.7 bits (130), Expect = 4e-08
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+FV +++ + +ED++ F +G I D V D T + +G+ +V F + DAE+A+ ++
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDD 112
+W+ GRQI +A RK P +E N R++D
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE--NNTKQLRFED 212
Score = 26.9 bits (58), Expect = 9.6
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 53 FAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
+ +V+F + RDA AL ++ + I G+++++ +A TP+ K
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSSQK 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,244,800
Number of Sequences: 37866
Number of extensions: 312560
Number of successful extensions: 3151
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 1262
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.