Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169161476
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161476 PREDICTED: hypothetical protein [Homo sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161476 PREDICTED: hypothetical protein [Homo sapiens] 236 2e-63
gi|50658075 phosphodiesterase 4D interacting protein isoform 3 [... 172 5e-44
gi|239757622 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|239752128 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|239746636 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|197085610 histamine receptor H2 isoform 1 [Homo sapiens] 36 0.008
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 0.19
gi|81295809 pericentrin [Homo sapiens] 31 0.19
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 30 0.32
gi|122937211 KIAA0368 protein [Homo sapiens] 30 0.32
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 30 0.42
gi|119709822 castor homolog 1, zinc finger isoform b [Homo sapiens] 30 0.42
gi|4504469 homeobox B5 [Homo sapiens] 30 0.42
gi|148529025 pleckstrin homology domain containing, family G (wi... 29 0.71
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 29 0.93
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 29 0.93
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 29 0.93
gi|239753710 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239748266 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens] 28 1.2
gi|239742167 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 28 1.2
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 28 1.2
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 28 1.2
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 28 1.2
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 28 1.2
gi|66730481 neuregulin 3 [Homo sapiens] 28 1.6
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 28 1.6
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 28 1.6
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 28 2.1
>gi|169161476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 236 bits (603), Expect = 2e-63
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW 60
MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW
Sbjct: 1 MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW 60
Query: 61 AAAAEEEEAAAAATPWMRAGALPDGWMEAMQDKFLLKSILCFGLEDRTY 109
AAAAEEEEAAAAATPWMRAGALPDGWMEAMQDKFLLKSILCFGLEDRTY
Sbjct: 61 AAAAEEEEAAAAATPWMRAGALPDGWMEAMQDKFLLKSILCFGLEDRTY 109
>gi|50658075 phosphodiesterase 4D interacting protein isoform 3
[Homo sapiens]
Length = 310
Score = 172 bits (436), Expect = 5e-44
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW 60
MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW
Sbjct: 1 MKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSW 60
Query: 61 AAAAEEEEAAAAATPWMR 78
AAAAEEEEAAAAATPWMR
Sbjct: 61 AAAAEEEEAAAAATPWMR 78
>gi|239757622 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 4 TDSGSC---CRRRCDFGCCCRASR-----RAHYTPYRSGDATRTPQSPRQTPSRERRRPE 55
+D GS CRR+ G R S RA P +G A TP S R P+ ER+R
Sbjct: 41 SDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP-SARAAPTSERKRGR 99
Query: 56 PAGSWAAAAEEEEAAAAATPWM 77
P WA + AA A WM
Sbjct: 100 PHSLWATGTRSDSAALPA--WM 119
>gi|239752128 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 4 TDSGSC---CRRRCDFGCCCRASR-----RAHYTPYRSGDATRTPQSPRQTPSRERRRPE 55
+D GS CRR+ G R S RA P +G A TP S R P+ ER+R
Sbjct: 66 SDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP-SARAAPTSERKRGR 124
Query: 56 PAGSWAAAAEEEEAAAAATPWM 77
P WA + AA A WM
Sbjct: 125 PHSLWATGTRSDSAALPA--WM 144
>gi|239746636 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 4 TDSGSC---CRRRCDFGCCCRASR-----RAHYTPYRSGDATRTPQSPRQTPSRERRRPE 55
+D GS CRR+ G R S RA P +G A TP S R P+ ER+R
Sbjct: 41 SDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP-SARAAPTSERKRGR 99
Query: 56 PAGSWAAAAEEEEAAAAATPWM 77
P WA + AA A WM
Sbjct: 100 PHSLWATGTRSDSAALPA--WM 119
>gi|197085610 histamine receptor H2 isoform 1 [Homo sapiens]
Length = 397
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 18 CCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWM 77
CC A+R +H T RS +A++ ++ + P ++ +P W+ A PW+
Sbjct: 304 CCRLANRNSHKTSLRS-NASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDRPWL 362
Query: 78 RAGALPDGWMEAMQDKFL 95
LP+ W + F+
Sbjct: 363 ---CLPECWSVELTHSFI 377
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 36 ATRTPQSPRQTPSRE-------RRRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDG 85
AT P SP Q PS + P P G A AE EEAAA P GA P+G
Sbjct: 2343 ATEKP-SPFQVPSEDCAANGPTETSPNPPGPAPAKAENEEAAAC--PAWERGAWPEG 2396
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/52 (36%), Positives = 22/52 (42%)
Query: 32 RSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMRAGALP 83
R G R PQSP +T R P+G A AAAA+P A P
Sbjct: 3232 RPGPRARQPQSPPRTRESPPTRDVPSGHTRDPARGRRLAAAASPHSGGRATP 3283
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 30 PYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDG 85
P + D R P P++ P E R P+P GS AE +A A + LP G
Sbjct: 814 PATAEDPGRRPVLPQRPP--EERPPQPPGSTGVIAETGQAGPPAGAGVSGRGLPRG 867
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 34 GDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDG 85
G A RTP+S T R +RP +E AA P R GA+ G
Sbjct: 113 GPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPRAAGDWPCARGGAVRPG 164
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo
sapiens]
Length = 1759
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 19 CCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWM 77
C + SR+ R+ + T SP Q +ER PE + A +EE++ A W+
Sbjct: 35 CAKLSRQV-VVEKRADAGSHTEGSPSQPRDQERSGPESGAARAPRSEEDKRRAVIEKWV 92
>gi|119709822 castor homolog 1, zinc finger isoform b [Homo
sapiens]
Length = 1166
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 19 CCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWM 77
C + SR+ R+ + T SP Q +ER PE + A +EE++ A W+
Sbjct: 35 CAKLSRQV-VVEKRADAGSHTEGSPSQPRDQERSGPESGAARAPRSEEDKRRAVIEKWV 92
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 22 ASRRAHYTPYRSGDATRTPQ---SPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMR 78
AS A++T A+ P+ S +PS R +PEP + AA E + PWMR
Sbjct: 124 ASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQ--TPQIFPWMR 181
>gi|148529025 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4B [Homo sapiens]
Length = 1271
Score = 29.3 bits (64), Expect = 0.71
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 15 DFGCCCRASRRAHYTPYRSGDATRTP--QSPRQTPSRE------RRRPEPAGSWAAAAEE 66
D G AS T GD +TP + R TPSR R P + SW A
Sbjct: 31 DLGTGAVASGTQEETSGPRGDPQQTPSLEKERHTPSRTGPGAAGRTLPRRSRSWERAPRS 90
Query: 67 E---EAAAAATPWMRAGALPDG 85
+AAA T AG+ P G
Sbjct: 91 SRGAQAAACHTSHHSAGSRPGG 112
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 23 SRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAA 64
S RA P GDA PQ P + + + P PA AAAA
Sbjct: 90 SLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAA 131
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 35 DATRTPQSPRQTPSRE-------RRRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDGW- 86
D +P+ PR+ PS R R AGS AAA AAA++ + P+ W
Sbjct: 304 DLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWG 363
Query: 87 MEAMQDKFLLKSILCFGL 104
++ F+ S+ F L
Sbjct: 364 RQSTASSFVDSSLSAFAL 381
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 SRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEP 56
S R+ ++PYR G R P + PS ERR P P
Sbjct: 181 SARSMFSPYREGPI-RGPCALAPNPSSERRSPRP 213
>gi|239753710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 21 RASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGS-WAAAAEEEEAAAAATP 75
R+S RA+ T R R P+ P PAG+ WA + E E AAAA P
Sbjct: 192 RSSARANSTTSR----LRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAAAVP 243
>gi|239748266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 21 RASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGS-WAAAAEEEEAAAAATP 75
R+S RA+ T R R P+ P PAG+ WA + E E AAAA P
Sbjct: 192 RSSARANSTTSR----LRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAAAVP 243
>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
Length = 189
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 31 YRSGDATRTPQSPRQTPSRERRRPEPA--GSWAAAAEEEEAAAAATPWMRAGALP 83
+R D T + P + P+R + P PA G AA A AAAA A A P
Sbjct: 110 HREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAP 164
>gi|239742167 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 21 RASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGS-WAAAAEEEEAAAAATP 75
R+S RA+ T R R P+ P PAG+ WA + E E AAAA P
Sbjct: 192 RSSARANSTTSR----LRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAAAVP 243
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 52 RRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDGWMEAMQ 91
R P PA + E++ A+A PW A A+P W+ +Q
Sbjct: 980 RGPPPAPEGGSRDEQDGASAETEPW--AAAVPPEWVPIIQ 1017
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 52 RRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDGWMEAMQ 91
R P PA + E++ A+A PW A A+P W+ +Q
Sbjct: 980 RGPPPAPEGGSRDEQDGASAETEPW--AAAVPPEWVPIIQ 1017
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 52 RRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDGWMEAMQ 91
R P PA + E++ A+A PW A A+P W+ +Q
Sbjct: 980 RGPPPAPEGGSRDEQDGASAETEPW--AAAVPPEWVPIIQ 1017
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 52 RRPEPAGSWAAAAEEEEAAAAATPWMRAGALPDGWMEAMQ 91
R P PA + E++ A+A PW A A+P W+ +Q
Sbjct: 986 RGPPPAPEGGSRDEQDGASAETEPW--AAAVPPEWVPIIQ 1023
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 22 ASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAAT 74
A+ A P G R+P+S R++ S ERR P A A+ ++ ++T
Sbjct: 114 AAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSST 166
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 56 PAGSWAAAAEEEEAAAAATPWMRAGALPDG 85
P + AAAA EE AAA AG PDG
Sbjct: 11 PGAASAAAASAEEGTAAAAAAAAAGGGPDG 40
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 33 SGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMRA--GALPDGWMEAM 90
+G+A+R Q R P + RRP+ A + A A TP +R DGW
Sbjct: 66 AGEASRGRQRARSGPPKSPRRPDA----QLRAARTQRARAQTPQLRREDARAGDGWPRRE 121
Query: 91 QD 92
+D
Sbjct: 122 ED 123
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 7 GSCCRRRCDFGCCCRAS 23
GSCC+ C CCC++S
Sbjct: 155 GSCCQSSCCNPCCCQSS 171
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 22 ASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPAGSWAAAAEEEEAAAAATPWMRAGA 81
AS + TP R+G+ P++P Q + P+ AG + P + A
Sbjct: 50 ASDNSGETPQRNGEGHTLPKTPSQAEPASHKGPKDAGRRRNSLPPSHQKPPRNPLSSSDA 109
Query: 82 LPDGWMEA 89
P ++A
Sbjct: 110 APSPELQA 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,128,955
Number of Sequences: 37866
Number of extensions: 259481
Number of successful extensions: 2290
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1997
Number of HSP's gapped (non-prelim): 357
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.