Guide to the Human Genome
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Name: LOC100133167 Sequence: fasta or formatted (124aa) NCBI GI: 239757622
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {124aa} PREDICTED: hypothetical protein
alt prot {149aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         16           2
 C cysteine            1.6          2           1
 D aspartate           2.4          3           1
 E glutamate           4.0          5           1
 F phenylalanine       0.0          0           0
 G glycine            12.1         15           1
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine              1.6          2           1
 L leucine             5.6          7           1
 M methionine          2.4          3           1
 N asparagine          0.8          1           1
 P proline             8.1         10           2
 Q glutamine           7.3          9           1
 R arginine           16.1         20           2
 S serine             12.1         15           2
 T threonine           5.6          7           2
 V valine              2.4          3           1
 W tryptophan          3.2          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133167          1.000   PREDICTED: hypothetical protein 
LOC100133167          1.000   PREDICTED: hypothetical protein 
LOC100134230          0.052   PREDICTED: hypothetical protein 
PDE4DIP               0.052   phosphodiesterase 4D interacting protein isoform 3 [...
LOC730130             0.043   hypothetical protein LOC730130 
SYVN1                 0.039   synoviolin 1 isoform b 
LOC100287250          0.039   PREDICTED: hypothetical protein XP_002344493 
YLPM1                 0.039   YLP motif containing 1 
LOC284297             0.035   hypothetical protein LOC284297 
PPRC1                 0.035   peroxisome proliferator-activated receptor gamma, co...
LPIN1                 0.035   lipin 1 
FLJ37078              0.035   hypothetical protein LOC222183 
N-PAC                 0.035   cytokine-like nuclear factor n-pac 
CIC                   0.035   capicua homolog 
RICH2                 0.035   Rho GTPase-activating protein RICH2 
SRRM2                 0.035   splicing coactivator subunit SRm300 
HMGXB3                0.030   HMG box domain containing 3 
FGF2                  0.030   fibroblast growth factor 2 
CC2D1A                0.030   coiled-coil and C2 domain containing 1A 
LOC100293596          0.026   PREDICTED: similar to mucin 
LOC100134702          0.026   PREDICTED: similar to mucin 
CABP4                 0.026   calcium binding protein 4 
C14orf4               0.026   chromosome 14 open reading frame 4 
HOXD11                0.026   homeobox D11 
LOC100129890          0.026   PREDICTED: hypothetical protein 
LOC100129890          0.026   PREDICTED: hypothetical protein 
ZNF219                0.026   zinc finger protein 219 
ZNF219                0.026   zinc finger protein 219 
SRRM1                 0.026   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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