Guide to the Human Genome
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Name: LOC100134230 Sequence: fasta or formatted (109aa) NCBI GI: 169161476
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         16           5
 C cysteine            6.4          7           3
 D aspartate           5.5          6           1
 E glutamate           7.3          8           4
 F phenylalanine       2.8          3           1
 G glycine             7.3          8           1
 H histidine           0.9          1           1
 I isoleucine          0.9          1           1
 K lysine              2.8          3           1
 L leucine             4.6          5           2
 M methionine          3.7          4           1
 N asparagine          0.0          0           0
 P proline             7.3          8           1
 Q glutamine           2.8          3           1
 R arginine           13.8         15           3
 S serine              7.3          8           1
 T threonine           6.4          7           1
 V valine              0.0          0           0
 W tryptophan          2.8          3           1
 Y tyrosine            2.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
PDE4DIP               0.697   phosphodiesterase 4D interacting protein isoform 3 [...
LOC100133167          0.057   PREDICTED: hypothetical protein 
LOC100133167          0.057   PREDICTED: hypothetical protein 
LOC100133167          0.057   PREDICTED: hypothetical protein 
HRH2                  0.052   histamine receptor H2 isoform 1 
MAP1A                 0.028   microtubule-associated protein 1A 
PCNT                  0.028   pericentrin 
EMILIN2               0.024   elastin microfibril interfacer 2 
KIAA0368              0.024   KIAA0368 protein 
CASZ1                 0.024   castor homolog 1, zinc finger isoform a 
CASZ1                 0.024   castor homolog 1, zinc finger isoform b 
HOXB5                 0.024   homeobox B5 
PLEKHG4B              0.019   pleckstrin homology domain containing, family G (wi...
DMRT3                 0.019   doublesex and mab-3 related transcription factor 3 [...
TTMA                  0.019   hypothetical protein LOC645369 
FLJ46210              0.019   hypothetical protein LOC389152 
LOC100128025          0.014   PREDICTED: hypothetical protein 
LOC100128025          0.014   PREDICTED: hypothetical protein 
LOC100129203          0.014   PREDICTED: similar to mCG50504 
LOC100128025          0.014   PREDICTED: hypothetical protein 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform a 
GLCCI1                0.014   glucocorticoid induced transcript 1 
NRG3                  0.014   neuregulin 3 
LOC100291206          0.014   PREDICTED: hypothetical protein XP_002347014 
KRTAP5-10             0.014   keratin associated protein 5-10 
ACACB                 0.014   acetyl-Coenzyme A carboxylase beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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