Guide to the Human Genome
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Name: LOC100133167 Sequence: fasta or formatted (149aa) NCBI GI: 239752128
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {124aa} PREDICTED: hypothetical protein
alt prot {124aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         21           2
 C cysteine            1.3          2           1
 D aspartate           2.0          3           1
 E glutamate           4.7          7           1
 F phenylalanine       0.0          0           0
 G glycine            12.1         18           2
 H histidine           0.7          1           1
 I isoleucine          0.7          1           1
 K lysine              1.3          2           1
 L leucine             4.7          7           1
 M methionine          2.7          4           1
 N asparagine          0.7          1           1
 P proline             8.7         13           2
 Q glutamine           6.7         10           1
 R arginine           15.4         23           2
 S serine             12.1         18           2
 T threonine           5.4          8           2
 V valine              2.7          4           1
 W tryptophan          4.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133167          0.813   PREDICTED: hypothetical protein 
LOC100133167          0.813   PREDICTED: hypothetical protein 
FUT4                  0.046   fucosyltransferase 4 
LOC100133264          0.042   PREDICTED: hypothetical protein 
LOC100133264          0.042   PREDICTED: hypothetical protein 
LOC100134230          0.042   PREDICTED: hypothetical protein 
PDE4DIP               0.042   phosphodiesterase 4D interacting protein isoform 3 [...
SRRM2                 0.039   splicing coactivator subunit SRm300 
LOC730130             0.035   hypothetical protein LOC730130 
PPRC1                 0.035   peroxisome proliferator-activated receptor gamma, co...
SYVN1                 0.032   synoviolin 1 isoform b 
LOC100134702          0.032   PREDICTED: similar to mucin 
C17orf55              0.032   hypothetical protein LOC284185 
LOC100287250          0.032   PREDICTED: hypothetical protein XP_002344493 
YLPM1                 0.032   YLP motif containing 1 
LOC284297             0.028   hypothetical protein LOC284297 
LOC731605             0.028   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.028   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.028   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.028   BCL2-associated transcription factor 1 isoform 1 [Hom...
LPIN1                 0.028   lipin 1 
FLJ37078              0.028   hypothetical protein LOC222183 
N-PAC                 0.028   cytokine-like nuclear factor n-pac 
CIC                   0.028   capicua homolog 
RICH2                 0.028   Rho GTPase-activating protein RICH2 
FGF2                  0.025   fibroblast growth factor 2 
LOC100292122          0.025   PREDICTED: hypothetical protein XP_002345138 
LOC100293596          0.025   PREDICTED: similar to mucin 
LOC100286986          0.025   PREDICTED: hypothetical protein XP_002344191 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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