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Search of human proteins with 168480080
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|168480080 BCL2/adenovirus E1B 19kD interacting protein 2
[Homo sapiens]
(435 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|168480080 BCL2/adenovirus E1B 19kD interacting protein 2 [Hom... 885 0.0
gi|29336043 caytaxin [Homo sapiens] 357 9e-99
gi|162287219 prune homolog 2 [Homo sapiens] 342 3e-94
gi|109715844 BCL2/adenovirus E1B 19kD interacting protein like i... 311 6e-85
gi|228008343 BCL2/adenovirus E1B 19kD interacting protein like i... 284 1e-76
gi|4757766 Rho GTPase activating protein 1 [Homo sapiens] 119 7e-27
gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens] 100 3e-21
gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo sapi... 100 3e-21
gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo sapi... 85 1e-16
gi|8923143 ganglioside induced differentiation associated protei... 56 7e-08
gi|207450721 ganglioside induced differentiation associated prot... 55 1e-07
gi|55956788 nucleolin [Homo sapiens] 34 0.23
gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens] 34 0.30
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 33 0.51
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 33 0.51
gi|12751477 forkhead box L2 [Homo sapiens] 33 0.66
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.66
gi|210031233 PR domain containing 6 [Homo sapiens] 33 0.66
gi|112421108 capicua homolog [Homo sapiens] 33 0.66
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens] 32 0.86
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 32 0.86
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens] 32 0.86
gi|4506541 retinaldehyde binding protein 1 [Homo sapiens] 32 1.1
gi|51468067 Sp5 transcription factor [Homo sapiens] 32 1.1
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 32 1.1
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 32 1.1
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 32 1.1
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 32 1.1
gi|88759348 ring finger protein 219 [Homo sapiens] 32 1.1
gi|12669915 E2F transcription factor 4 [Homo sapiens] 32 1.5
>gi|168480080 BCL2/adenovirus E1B 19kD interacting protein 2 [Homo
sapiens]
Length = 435
Score = 885 bits (2288), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MLCGFQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWA 60
MLCGFQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWA
Sbjct: 1 MLCGFQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWA 60
Query: 61 GVSTADRGERAPLGPAFCDLAVSPTSPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRL 120
GVSTADRGERAPLGPAFCDLAVSPTSPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRL
Sbjct: 61 GVSTADRGERAPLGPAFCDLAVSPTSPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRL 120
Query: 121 RMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDIS 180
RMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDIS
Sbjct: 121 RMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDIS 180
Query: 181 LTLDPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYT 240
LTLDPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYT
Sbjct: 181 LTLDPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYT 240
Query: 241 AAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESS 300
AAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESS
Sbjct: 241 AAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESS 300
Query: 301 QPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRK 360
QPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRK
Sbjct: 301 QPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRK 360
Query: 361 NLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQV 420
NLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQV
Sbjct: 361 NLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQV 420
Query: 421 DQELNGKQDEPKNEQ 435
DQELNGKQDEPKNEQ
Sbjct: 421 DQELNGKQDEPKNEQ 435
>gi|29336043 caytaxin [Homo sapiens]
Length = 371
Score = 357 bits (917), Expect = 9e-99
Identities = 179/326 (54%), Positives = 237/326 (72%), Gaps = 23/326 (7%)
Query: 117 ESRLRMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNG-NKVRKKLM 175
E+ LRME V++KEEWQDED P PLPE+ +E + P +L NG ++ RK L+
Sbjct: 5 EATLRMENVDVKEEWQDEDLPRPLPEETGVELLGSPVEDTSSPPNTLNFNGAHRKRKTLV 64
Query: 176 APDISLTLDPSDGSVLSDD-LDESGEIDL--DGLDTPSE--------NSNEFEWEDDLPK 224
AP+I+++LD S+GS+LSDD LD ++D+ D ++TP E N NE EWEDD P
Sbjct: 65 APEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDSLEFLGNGNELEWEDDTPV 124
Query: 225 PK-------TTEVIRKGSITEYTAAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISH 277
+ ++ G+ + +AA +GR WR IGEQ+HR+D+ I PY KV++H
Sbjct: 125 ATAKNMPGDSADLFGDGTTEDGSAA----NGRLWRTVIIGEQEHRIDLHMIRPYMKVVTH 180
Query: 278 GGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATT 337
GGYYG+GLNAI+VFA CF+P+SS P+Y Y+M+NLF YVI +LELLVAE+YMIVYLNGAT
Sbjct: 181 GGYYGEGLNAIIVFAACFLPDSSLPDYHYIMENLFLYVISSLELLVAEDYMIVYLNGATP 240
Query: 338 RRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVF 397
RR+MP +GWL+KCYQ IDRRLRKNLKSLIIVHPSWFIRT+LA++RPFIS KF KI+YV
Sbjct: 241 RRRMPGIGWLKKCYQMIDRRLRKNLKSLIIVHPSWFIRTVLAISRPFISVKFINKIQYVH 300
Query: 398 NLAELAELVPMEYVGIPECIKQVDQE 423
+L +L +L+PME+V IP+C+ Q ++E
Sbjct: 301 SLEDLEQLIPMEHVQIPDCVLQYEEE 326
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 342 bits (878), Expect = 3e-94
Identities = 178/303 (58%), Positives = 225/303 (74%), Gaps = 6/303 (1%)
Query: 134 EDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRK-KLMAPDISLTLDPSDGSVLS 192
ED + +P ++ + + A PE P SL++N R+ KL AP+I+L+LD S+GS+LS
Sbjct: 2763 EDVGMDIPFEEGVLSPSAADMRPEP-PNSLDLNDTHPRRIKLTAPNINLSLDQSEGSILS 2821
Query: 193 DD-LDESGEIDL--DGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEEKEDGR 249
DD LD EID+ D LDTP E ++ FE+ P SI EYTA EE+ED R
Sbjct: 2822 DDNLDSPDEIDINVDELDTPDE-ADSFEYTGHDPTANKDSGQESESIPEYTAEEEREDNR 2880
Query: 250 RWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMD 309
WR IGEQ+ R+DMK IEPY++VISHGGYYGDGLNAI+VFA CF+P+SS+ +Y Y+M+
Sbjct: 2881 LWRTVVIGEQEQRIDMKVIEPYRRVISHGGYYGDGLNAIIVFAACFLPDSSRADYHYVME 2940
Query: 310 NLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVH 369
NLF YVI TLEL+VAE+YMIVYLNGAT RR+MP LGW++KCYQ IDRRLRKNLKS IIVH
Sbjct: 2941 NLFLYVISTLELMVAEDYMIVYLNGATPRRRMPGLGWMKKCYQMIDRRLRKNLKSFIIVH 3000
Query: 370 PSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGKQD 429
PSWFIRT+LAVTRPFISSKFS KI+YV +L+EL+ L+PM+ + IPE I ++D+EL +
Sbjct: 3001 PSWFIRTILAVTRPFISSKFSSKIKYVNSLSELSGLIPMDCIHIPESIIKLDEELREASE 3060
Query: 430 EPK 432
K
Sbjct: 3061 AAK 3063
>gi|109715844 BCL2/adenovirus E1B 19kD interacting protein like
isoform a [Homo sapiens]
Length = 357
Score = 311 bits (798), Expect = 6e-85
Identities = 157/353 (44%), Positives = 241/353 (68%), Gaps = 40/353 (11%)
Query: 103 DIGSLDYQEFVVDIESRLRMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQ--- 159
D+G + E ++ + LR +ELKEEWQDE+FP LPE+ D PED
Sbjct: 12 DVGVREIAE-APELGAALRHGELELKEEWQDEEFPRLLPEEAGTSED------PEDPKGD 64
Query: 160 -------PGSLEVNGNK-VRKKLMAPDISLTLDPSDGS-------VLSDDLDESGEIDLD 204
P +L + G + +RK+L AP++ L+L G+ D S ++++D
Sbjct: 65 SQAAAGTPSTLALCGQRPMRKRLSAPELRLSLTKGPGNDGASPTQSAPSSPDGSSDLEID 124
Query: 205 GLDTPSENS-----NEFEWEDDLPKPK------TTEVIRKGSITEYTAAEEKEDGRRWRM 253
L+TPS++ +EFEWED+LP+ + T E + +G + + T EDG WR+
Sbjct: 125 ELETPSDSEQLDSGHEFEWEDELPRAEGLGTSETAERLGRGCMWDVTG----EDGHHWRV 180
Query: 254 FRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFK 313
FR+G ++ RVDM IEPYKKV+SHGGY+GDGLNA+++FA C++P SS PNY Y+M++LF+
Sbjct: 181 FRMGPREQRVDMTVIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYVMEHLFR 240
Query: 314 YVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWF 373
Y++GTLELLVAENY++V+L+G T+R ++P L W+R+CY+ +DRRLRKNL++L++VH +W+
Sbjct: 241 YMVGTLELLVAENYLLVHLSGGTSRAQVPPLSWIRQCYRTLDRRLRKNLRALVVVHATWY 300
Query: 374 IRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNG 426
++ LA+ RPFISSKF++KIR++ +L ELA+L+ ++ V IPE ++Q+D++L+G
Sbjct: 301 VKAFLALLRPFISSKFTRKIRFLDSLGELAQLISLDQVHIPEAVRQLDRDLHG 353
>gi|228008343 BCL2/adenovirus E1B 19kD interacting protein like
isoform b [Homo sapiens]
Length = 275
Score = 284 bits (726), Expect = 1e-76
Identities = 131/275 (47%), Positives = 204/275 (74%), Gaps = 22/275 (8%)
Query: 170 VRKKLMAPDISLTLDPSDGS-------VLSDDLDESGEIDLDGLDTPSENS-----NEFE 217
+RK+L AP++ L+L G+ D S ++++D L+TPS++ +EFE
Sbjct: 1 MRKRLSAPELRLSLTKGPGNDGASPTQSAPSSPDGSSDLEIDELETPSDSEQLDSGHEFE 60
Query: 218 WEDDLPKPK------TTEVIRKGSITEYTAAEEKEDGRRWRMFRIGEQDHRVDMKAIEPY 271
WED+LP+ + T E + +G + + T EDG WR+FR+G ++ RVDM IEPY
Sbjct: 61 WEDELPRAEGLGTSETAERLGRGCMWDVTG----EDGHHWRVFRMGPREQRVDMTVIEPY 116
Query: 272 KKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVY 331
KKV+SHGGY+GDGLNA+++FA C++P SS PNY Y+M++LF+Y++GTLELLVAENY++V+
Sbjct: 117 KKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYVMEHLFRYMVGTLELLVAENYLLVH 176
Query: 332 LNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQ 391
L+G T+R ++P L W+R+CY+ +DRRLRKNL++L++VH +W+++ LA+ RPFISSKF++
Sbjct: 177 LSGGTSRAQVPPLSWIRQCYRTLDRRLRKNLRALVVVHATWYVKAFLALLRPFISSKFTR 236
Query: 392 KIRYVFNLAELAELVPMEYVGIPECIKQVDQELNG 426
KIR++ +L ELA+L+ ++ V IPE ++Q+D++L+G
Sbjct: 237 KIRFLDSLGELAQLISLDQVHIPEAVRQLDRDLHG 271
>gi|4757766 Rho GTPase activating protein 1 [Homo sapiens]
Length = 439
Score = 119 bits (297), Expect = 7e-27
Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 217 EWEDDLPKPKTTEVIRK---GSITEYT-AAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYK 272
E +DDL T+E + + SI E ++E D + + + +K +PY
Sbjct: 6 ELQDDLTLDDTSEALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPELVTHLKWDDPYY 65
Query: 273 KVISH-------GGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAE 325
+ H YG I+VF+ C MP S Q ++ L+ Y+ TL+ V
Sbjct: 66 DIARHQIVEVAGDDKYG---RKIIVFSACRMPPSHQLDHSKLLG----YLKHTLDQYVES 118
Query: 326 NYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFI 385
+Y ++YL+ T PSL WLR Y++ DR+ +KN+K+L IVHP+ FI+TLL + +P I
Sbjct: 119 DYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLI 178
Query: 386 SSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGKQDEP 431
S KF QKI YV L+EL+E V +E +GIP + + D L Q P
Sbjct: 179 SFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSP 224
>gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens]
Length = 555
Score = 100 bits (248), Expect = 3e-21
Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 4/137 (2%)
Query: 288 IVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 347
+V F+ C MP S + +++ L++ L KY TL+ V +Y IVY + R PSLGWL
Sbjct: 157 VVTFSCCRMPPSHELDHQRLLEYL-KY---TLDQYVENDYTIVYFHYGLNSRNKPSLGWL 212
Query: 348 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 407
+ Y++ DR+ +KNLK+L +VHP+ FI+ L + +P IS KF +K+ Y L+EL E +
Sbjct: 213 QSAYKEFDRKYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKVIYFNYLSELHEHLK 272
Query: 408 MEYVGIPECIKQVDQEL 424
+ + IP + + D++L
Sbjct: 273 YDQLVIPPEVLRYDEKL 289
>gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo
sapiens]
Length = 433
Score = 100 bits (248), Expect = 3e-21
Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 4/137 (2%)
Query: 288 IVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 347
+V F+ C MP S + +++ L++ L KY TL+ V +Y IVY + R PSLGWL
Sbjct: 35 VVTFSCCRMPPSHELDHQRLLEYL-KY---TLDQYVENDYTIVYFHYGLNSRNKPSLGWL 90
Query: 348 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 407
+ Y++ DR+ +KNLK+L +VHP+ FI+ L + +P IS KF +K+ Y L+EL E +
Sbjct: 91 QSAYKEFDRKYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKVIYFNYLSELHEHLK 150
Query: 408 MEYVGIPECIKQVDQEL 424
+ + IP + + D++L
Sbjct: 151 YDQLVIPPEVLRYDEKL 167
>gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo
sapiens]
Length = 464
Score = 85.1 bits (209), Expect = 1e-16
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 35/168 (20%)
Query: 288 IVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 347
+V F+ C MP S + +++ L++ L KY TL+ V +Y IVY + R PSLGWL
Sbjct: 35 VVTFSCCRMPPSHELDHQRLLEYL-KY---TLDQYVENDYTIVYFHYGLNSRNKPSLGWL 90
Query: 348 RKCYQQIDR-------------------------------RLRKNLKSLIIVHPSWFIRT 376
+ Y++ DR R +KNLK+L +VHP+ FI+
Sbjct: 91 QSAYKEFDRKDGDLTMWPRLVSNSKLKRSSHLSLPKYWDYRYKKNLKALYVVHPTSFIKV 150
Query: 377 LLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQEL 424
L + +P IS KF +K+ Y L+EL E + + + IP + + D++L
Sbjct: 151 LWNILKPLISHKFGKKVIYFNYLSELHEHLKYDQLVIPPEVLRYDEKL 198
>gi|8923143 ganglioside induced differentiation associated protein 2
isoform a [Homo sapiens]
Length = 497
Score = 55.8 bits (133), Expect = 7e-08
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 308 MDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLII 367
MD Y I ++ + + Y++VY + T+ +L+K Y +D + ++NLK++
Sbjct: 367 MDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYF 426
Query: 368 VHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNG 426
VHP++ + F S KI +V +L +L + E + P + + D NG
Sbjct: 427 VHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENG 485
>gi|207450721 ganglioside induced differentiation associated protein
2 isoform b [Homo sapiens]
Length = 496
Score = 55.5 bits (132), Expect = 1e-07
Identities = 29/124 (23%), Positives = 57/124 (45%)
Query: 308 MDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLII 367
MD Y I ++ + + Y++VY + T+ +L+K Y +D + ++NLK++
Sbjct: 367 MDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYF 426
Query: 368 VHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGK 427
VHP++ + F S KI +V +L +L + E + P + + D +
Sbjct: 427 VHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARVRST 486
Query: 428 QDEP 431
+ P
Sbjct: 487 RSSP 490
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 34.3 bits (77), Expect = 0.23
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 92 EEDEGAKASSGDIGSLDYQEFVVDIESRLRMEGVELKEEWQDEDFPIPLPEDDSIEADIL 151
EED+ ++ D D E ++ + E+ DED +DD E D
Sbjct: 148 EEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDD-- 205
Query: 152 AITGPEDQPGSLEVNGNKVRKKLMAPDISLTLDPSDGSVLSDDLDESGEIDLDGLDTPSE 211
+ ++E K +K + D DD DE + D D D E
Sbjct: 206 ------SEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDE 259
Query: 212 NSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEE 244
+ E E E++ K RK + + AA E
Sbjct: 260 DDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPE 292
>gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens]
Length = 377
Score = 33.9 bits (76), Expect = 0.30
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 85 TSPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRLRMEGVELKEEWQDEDFPIPLPEDD 144
+SP G EG+ + +G + E VVD++ ++RME V+ +EE +++ EDD
Sbjct: 274 SSPGKEGHSPEGSTVTYHLLGPQEEGEGVVDVKGQVRME-VQGEEEKREDKEDEEDEEDD 332
Query: 145 SI----EADILAITGPEDQPGSLEVN 166
+ E D L + + + G ++N
Sbjct: 333 DVSHVDEEDCLGVQREDRRGGDGQIN 358
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 33.1 bits (74), Expect = 0.51
Identities = 51/233 (21%), Positives = 81/233 (34%), Gaps = 19/233 (8%)
Query: 12 PPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAA--ADAVPLRPGDWAGVSTADRGE 69
P P P + +P P + P + SA+ A AVP P T +
Sbjct: 453 PAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQ-----KTPPPSQ 507
Query: 70 RAPLGPAFCDLAVSPTSPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRLRM------- 122
+AP P AVSPT+P + + +YQ + SR ++
Sbjct: 508 KAPSVPTIPQKAVSPTAPKKKSLLLPAPSQKALPTSPTEYQMALSPPASRGKLPGDFDVL 567
Query: 123 ----EGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGS-LEVNGNKVRKKLMAP 177
G + E Q P P+ + E D++ +T P S V + + L++
Sbjct: 568 PTGIPGRAVLERSQSGGKPEPVVTVRTQETDVVEMTTQAKSPESPFTVTKKESKDILISQ 627
Query: 178 DISLTLDPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEV 230
+TL+ G +D +++ D P S E E K K V
Sbjct: 628 TKEVTLEAFRGQGKLEDWAHWAKLEERSPDLPGVRSKELEQRKRWVKAKELAV 680
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 33.1 bits (74), Expect = 0.51
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 9 ATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDW-----AGVS 63
A P PP P+ + P G + PP AAA++ P+ PG A
Sbjct: 486 APAPSPPAPKSCLKHRPAAASEGPAASPP--------LAAAESPPVEPGPGSLDAEAAAP 537
Query: 64 TADRGERAPLGPAFCDLAVSPTSPAWRGEEDEGAKASS 101
+ ERA PA + A G E GAK S
Sbjct: 538 ERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFS 575
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 32.7 bits (73), Expect = 0.66
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 9 ATPPPPPRPR------RLHRRL---PRPEEVGMLSLPPGLLTVSGSAAAADAVP 53
A PPPPP P LH P P G + PPG L+ + A AA P
Sbjct: 282 AAPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAP 335
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.7 bits (73), Expect = 0.66
Identities = 29/79 (36%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 9 ATPPPPPRPRRLHR---RLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWAGVSTA 65
A PPPPP P L R P PP GSA AA A G AGVS
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ 328
Query: 66 DRGERAPLGPAFCDLAVSP 84
A PA A SP
Sbjct: 329 PGPGAAAAAPAPGVKAESP 347
Score = 28.9 bits (63), Expect = 9.6
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 12 PPPPRPRR-LHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWAGVSTADRGER 70
P PP PRR L P P L PP GSA + VP AG A G
Sbjct: 105 PGPPSPRRPLVPAGPAPP-AAKLRPPP-----EGSAGSCAPVPAAAAVAAGPEPAPAGPA 158
Query: 71 APLGPA 76
P GPA
Sbjct: 159 KPAGPA 164
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 32.7 bits (73), Expect = 0.66
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 11 PPPPPRPRRLH----RRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWAGVSTAD 66
PPPPP P R PRP + S P + S S+A++ A AG+S
Sbjct: 53 PPPPPPPERAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALP 112
Query: 67 RGERAPLGP-AFCDLAVSPTSP 87
+ P A +A P P
Sbjct: 113 VSQLPVFAPLAAAAVAAEPLPP 134
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 32.7 bits (73), Expect = 0.66
Identities = 53/222 (23%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 15 PRPRRLHRRLPRPEEVGMLSLPPGLLTV--SGSAAAADAVPLRPGDWAGVSTAD---RGE 69
P+ +R + P+ + + S+P G SG A PL PG + + G+
Sbjct: 1167 PKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPRQPLEPGPVREPTAPESELEGQ 1226
Query: 70 RAPLGPAFCDLAVSPT---SPAWRGEEDEGAKASSGDIGSLDYQEFVVDIESRLRMEGVE 126
P P +PT SP +E A + + + D R+ +G+E
Sbjct: 1227 PTPPAPPPLPETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSSSDW--RVPGQGLE 1284
Query: 127 LKEEWQDEDFPIPLPE---DDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDISLTL 183
+ E P P P S E+ G D P E G + K+ P + T
Sbjct: 1285 NRGEPPTPPSPAPAPAVAPGGSSESSSGRAAG--DTPERKEAAGTGKKVKVRPPPLKKTF 1342
Query: 184 DPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKP 225
D D VLS+ E +L EF E+ LP P
Sbjct: 1343 DSVDNRVLSEVDFEERFAELP----------EFRPEEVLPSP 1374
>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.86
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 MLCGFQEDATPPPPPRPRRLHRR 23
+LC PPPPPRP R HRR
Sbjct: 193 LLCQHLLPLLPPPPPRPHRSHRR 215
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.86
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 9 ATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWAGVSTADRG 68
+ P PPPR +R RR E G+ S G L +G AA P+ D + D
Sbjct: 42 SAPTPPPRSQRRRRRSGEARE-GVCSRHCGGLMAAGQAA---RTPVPDADRRQSAVTDAT 97
Query: 69 ERAPLGPAFCDLAVSPTSPAW-----RGEEDEGA 97
+R A + +SP W RG D GA
Sbjct: 98 QRP---------AAAESSPVWTGLLQRGPHDRGA 122
>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.86
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 MLCGFQEDATPPPPPRPRRLHRR 23
+LC PPPPPRP R HRR
Sbjct: 193 LLCQHLLPLLPPPPPRPHRSHRR 215
>gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]
Length = 317
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 347 LRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKI 393
LRK + K++ +H W+ T V +PF+ SK +++
Sbjct: 220 LRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 266
>gi|51468067 Sp5 transcription factor [Homo sapiens]
Length = 398
Score = 32.0 bits (71), Expect = 1.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 4 GFQEDATPPPPPRPRRLHRRL---PRPEEVGMLSLPPGLLTVSGSAAAADAVPLRPGDWA 60
G+ PPPPP P R+L P P+++ S+P +G+ A VP +
Sbjct: 158 GYSNLLPPPPPPPPPPTCRQLSPNPAPDDLPWWSIPQ-----AGAGPGASGVP-----GS 207
Query: 61 GVSTADRG-ERAPLGPAFCDLAVSPTSPAWRG 91
G+S A G AP PA A + + RG
Sbjct: 208 GLSGACAGAPHAPRFPASAAAAAAAAAALQRG 239
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 5 FQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGS-AAAADAVPLRPGDWAGVS 63
F+ PP P P H P LSLP G +GS AAA ++ P G+
Sbjct: 204 FKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPY------GLP 257
Query: 64 TADRGERAPLGPAFCDLAVSPTSPAWRGE 92
A R APL L SPT+ + GE
Sbjct: 258 LAKRA--APLAFPPLGLTPSPTASSLLGE 284
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 5 FQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGS-AAAADAVPLRPGDWAGVS 63
F+ PP P P H P LSLP G +GS AAA ++ P G+
Sbjct: 193 FKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPY------GLP 246
Query: 64 TADRGERAPLGPAFCDLAVSPTSPAWRGE 92
A R APL L SPT+ + GE
Sbjct: 247 LAKRA--APLAFPPLGLTPSPTASSLLGE 273
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 5 FQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGS-AAAADAVPLRPGDWAGVS 63
F+ PP P P H P LSLP G +GS AAA ++ P G+
Sbjct: 193 FKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPY------GLP 246
Query: 64 TADRGERAPLGPAFCDLAVSPTSPAWRGE 92
A R APL L SPT+ + GE
Sbjct: 247 LAKRA--APLAFPPLGLTPSPTASSLLGE 273
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 5 FQEDATPPPPPRPRRLHRRLPRPEEVGMLSLPPGLLTVSGS-AAAADAVPLRPGDWAGVS 63
F+ PP P P H P LSLP G +GS AAA ++ P G+
Sbjct: 193 FKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPY------GLP 246
Query: 64 TADRGERAPLGPAFCDLAVSPTSPAWRGE 92
A R APL L SPT+ + GE
Sbjct: 247 LAKRA--APLAFPPLGLTPSPTASSLLGE 273
>gi|88759348 ring finger protein 219 [Homo sapiens]
Length = 726
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 201 IDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEEKEDGRRWR 252
+DLDGL S+ S EF E D + KT + KGS+T ++ E+G W+
Sbjct: 562 LDLDGLSKSSQGS-EFLEEPDKLEEKTELNLSKGSLTN----DQLENGSEWK 608
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 31.6 bits (70), Expect = 1.5
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 16/121 (13%)
Query: 9 ATPPPPPRPRRLH-RRLPRPEEVGML-SLPPGLLTVSGSAAAADAVPLRPGDWAGVSTAD 66
+TPPP P+P + RP + + PG V G A A + + G G + D
Sbjct: 223 STPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGP--GTDSKD 280
Query: 67 RGERA--PLGPAFCDL----------AVSPTSPAWRGEEDEGAKASSGDIGSLDYQEFVV 114
GE + PLGP D + S +S + + + +SSG S ++
Sbjct: 281 SGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKA 340
Query: 115 D 115
D
Sbjct: 341 D 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,414,609
Number of Sequences: 37866
Number of extensions: 1020034
Number of successful extensions: 5219
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 5009
Number of HSP's gapped (non-prelim): 228
length of query: 435
length of database: 18,247,518
effective HSP length: 105
effective length of query: 330
effective length of database: 14,271,588
effective search space: 4709624040
effective search space used: 4709624040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.