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Search of human proteins with 167466270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|167466270 PHD finger protein 13 [Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167466270 PHD finger protein 13 [Homo sapiens] 627 e-180
gi|116268091 PHD finger protein 23 [Homo sapiens] 129 3e-30
gi|18034775 PHD finger protein 20 [Homo sapiens] 59 4e-09
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 54 1e-07
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 47 2e-05
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 47 2e-05
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 43 3e-04
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 43 3e-04
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 43 3e-04
gi|117190342 PHD finger protein 2 [Homo sapiens] 39 0.006
gi|7662018 PHD finger protein 3 [Homo sapiens] 38 0.010
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 37 0.016
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 37 0.016
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 37 0.028
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 36 0.036
gi|32698700 PHD finger protein 8 [Homo sapiens] 36 0.036
gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens] 35 0.062
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.062
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 35 0.081
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 35 0.11
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 35 0.11
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 35 0.11
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 35 0.11
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 34 0.18
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 34 0.18
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 34 0.18
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 34 0.18
gi|215599585 integrator complex subunit 12 [Homo sapiens] 34 0.18
gi|21361851 integrator complex subunit 12 [Homo sapiens] 34 0.18
gi|46048234 nucleolar protein 8 [Homo sapiens] 34 0.18
>gi|167466270 PHD finger protein 13 [Homo sapiens]
Length = 300
Score = 627 bits (1617), Expect = e-180
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS 60
MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS
Sbjct: 1 MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS 60
Query: 61 TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK 120
TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK
Sbjct: 61 TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK 120
Query: 121 KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS 180
KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS
Sbjct: 121 KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS 180
Query: 181 CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP 240
CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP
Sbjct: 181 CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP 240
Query: 241 FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD 300
FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD
Sbjct: 241 FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD 300
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 129 bits (324), Expect = 3e-30
Identities = 81/216 (37%), Positives = 111/216 (51%), Gaps = 46/216 (21%)
Query: 97 LLQRAKPSNFLLDRKKTDKLKKKKKRKRR-------------------DSDAPGKEGYRG 137
+L+R +P+ D +K ++KK KKRK + D+D+ +E
Sbjct: 198 VLRRPRPTPG--DGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEE 255
Query: 138 GLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGK 197
+ E A P L P+AP P ATV P+ V +E K
Sbjct: 256 EEEEEEMATVVGGEAPVPVLPTPPEAPRPP--------------ATVHPEGVPPADSESK 301
Query: 198 RTIVRQGKQVVFRDEDSTGN-------DEDIMVDSDDDSWDLVTCFCMKPFAGRPMIECN 250
G +D D++ + DEDIMV+S DDSWDL+TC+C KPFAGRPMIEC+
Sbjct: 302 EV----GSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECS 357
Query: 251 ECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRR 286
C TWIHLSCAKI+K+NVP+ F CQKC++ + + RR
Sbjct: 358 LCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARR 393
Score = 74.7 bits (182), Expect = 9e-14
Identities = 58/149 (38%), Positives = 71/149 (47%), Gaps = 22/149 (14%)
Query: 14 EYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEE--LPLRSSPSPANSTAGTIDSDGWD 71
E P KRRRT+EDFNKFC+FVLAYAGYIP KEE P S SP + DSDGWD
Sbjct: 20 ETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPASGSSSPLRGESAA-DSDGWD 78
Query: 72 AGFSDIASSVPL----PVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKKKRKRRDS 127
+ SD+ + S R + PT Q P + + D +K K +DS
Sbjct: 79 SAPSDLRTIQTFVKKAKSSKRRAAQAGPT--QPGPPRSTFSRLQAPDSATLLEKMKLKDS 136
Query: 128 DAPGKEGYRGGLLKLEAADPYVETPTSPT 156
L L+ P V +P SPT
Sbjct: 137 -----------LFDLDG--PKVASPLSPT 152
>gi|18034775 PHD finger protein 20 [Homo sapiens]
Length = 1012
Score = 59.3 bits (142), Expect = 4e-09
Identities = 50/196 (25%), Positives = 74/196 (37%), Gaps = 18/196 (9%)
Query: 102 KPSNFLLDRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYV--ETPTSPTLQD 159
KPS L RK+ K K ++ + KE R K + E P S + D
Sbjct: 504 KPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEISD 563
Query: 160 IPQAPSDPCSGWDSDTPSSGSCATVSPDQVK---------EIKTEGKRTIVRQGKQVVFR 210
Q PS P + + SS Q+ ++K + + +
Sbjct: 564 TSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLW 623
Query: 211 DEDSTGNDEDIMVDSD-----DDSWD--LVTCFCMKPFAGRPMIECNECHTWIHLSCAKI 263
+D G D D+ + D DD +D +V C C MI+C EC W H C +
Sbjct: 624 SDDEYGQDVDVTTNPDEELDGDDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGL 683
Query: 264 RKSNVPEVFVCQKCRD 279
+ NVPE + C C+D
Sbjct: 684 LEENVPEKYTCYVCQD 699
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 54.3 bits (129), Expect = 1e-07
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 110 RKKTDK-----LKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAP 164
R+K DK +KKKK+K++ S Y L+ ++E +SP + +
Sbjct: 556 REKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLE------FLERCSSPLTRSSGSSL 609
Query: 165 SDPCSGWDSDTPSSGSCATVSPD-------QVKEIKTEGKRTIVRQGKQVVFRDEDSTGN 217
+ + T A +S D V + +++ G + +D DST
Sbjct: 610 ASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYN-QDFDSTNF 668
Query: 218 DEDIMVDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 277
+E D DD ++V C C MI+C EC W H C + + ++PE ++C C
Sbjct: 669 EES--QDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQYICYIC 726
Query: 278 RD 279
RD
Sbjct: 727 RD 728
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 47.4 bits (111), Expect = 2e-05
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 225 SDDDSW--DLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKF 282
S+D S+ D+ C C MI C++C W H+ C I + ++P+ ++C++C+
Sbjct: 109 SEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNL 168
Query: 283 DIRRS 287
D R+
Sbjct: 169 DKERA 173
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 47.4 bits (111), Expect = 2e-05
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 225 SDDDSW--DLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKF 282
S+D S+ D+ C C MI C++C W H+ C I + ++P+ ++C++C+
Sbjct: 109 SEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNL 168
Query: 283 DIRRS 287
D R+
Sbjct: 169 DKERA 173
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 43.1 bits (100), Expect = 3e-04
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 237 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEV-FVCQKCRDSKFDIRRSNR 289
C KP G PMI C++C W H C I + E+ + C KC + K D + R
Sbjct: 871 CNKPDDGSPMIGCDDCDDWYHWPCVGIMTAPPEEMQWFCPKCANKKKDKKHKKR 924
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 43.1 bits (100), Expect = 3e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 233 VTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEV--FVCQKCR--DSKFDIR--- 285
+ C C KP MI C+ C+ W H C +I + + + C++CR D K +IR
Sbjct: 27 IYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRH 86
Query: 286 RSNRSRTGSRK 296
+ +R R G+ +
Sbjct: 87 KKSRERDGNER 97
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 43.1 bits (100), Expect = 3e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 233 VTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEV--FVCQKCR--DSKFDIR--- 285
+ C C KP MI C+ C+ W H C +I + + + C++CR D K +IR
Sbjct: 27 IYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRH 86
Query: 286 RSNRSRTGSRK 296
+ +R R G+ +
Sbjct: 87 KKSRERDGNER 97
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 38.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 233 VTCFCMKPF-AGRPMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKC 277
V C C P+ R MIEC+ C W H SC + + P +++ C C
Sbjct: 6 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 53
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 38.1 bits (87), Expect = 0.010
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 236 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEV------FVCQKC---RDSKFDI 284
FC KP R M+ C C W H C + S ++ +VC KC D K +I
Sbjct: 722 FCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKTEI 779
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 37.4 bits (85), Expect = 0.016
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 150 ETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVF 209
E+ T +P +PS S W S T S + + + K++ K ++ ++
Sbjct: 1722 ESITEENYNFLPHSPSKKDSEWKSGTKVSRTFSYIKNKMSSSKKSKEKE---KEKDKIKE 1778
Query: 210 RDEDSTGNDEDIMVDSDDDSWDL-----VTCF-CMKPFAGRPMIECNECHTWIH------ 257
+++DS ++D + + ++C CMKPF + C C ++H
Sbjct: 1779 KEKDSKDKEKDKKTVNGHTFSSIPVVGPISCSQCMKPFTNKDAYTCANCSAFVHKGCRES 1838
Query: 258 -LSCAKIR 264
SCAK++
Sbjct: 1839 LASCAKVK 1846
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 37.4 bits (85), Expect = 0.016
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 150 ETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVF 209
E+ T +P +PS S W S T S + + + K++ K ++ ++
Sbjct: 1718 ESITEENYNFLPHSPSKKDSEWKSGTKVSRTFSYIKNKMSSSKKSKEKE---KEKDKIKE 1774
Query: 210 RDEDSTGNDEDIMVDSDDDSWDL-----VTCF-CMKPFAGRPMIECNECHTWIH------ 257
+++DS ++D + + ++C CMKPF + C C ++H
Sbjct: 1775 KEKDSKDKEKDKKTVNGHTFSSIPVVGPISCSQCMKPFTNKDAYTCANCSAFVHKGCRES 1834
Query: 258 -LSCAKIR 264
SCAK++
Sbjct: 1835 LASCAKVK 1842
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 36.6 bits (83), Expect = 0.028
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 233 VTCFCMKPF-AGRPMIECNECHTWIHLSCAKIRKSNVPEV--FVCQKC 277
V C C +P+ R MIEC+ C W H SC + + + ++ + C C
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 36.2 bits (82), Expect = 0.036
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 237 CMKPFAGRPMIECNECHTWIHLSCAKIR----KSNVPEVFVCQKCR 278
C P + M+ CN C W+HL C K + + E ++C C+
Sbjct: 473 CYHPELQKDMLHCNMCKRWVHLECDKPTDHELDTQLKEEYICMYCK 518
Score = 28.1 bits (61), Expect = 9.9
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 246 MIECNECHTWIHLSCAKIRK----SNVPEV-FVCQKCR 278
+++C +C W+H C + NV ++ F C CR
Sbjct: 1100 ILQCRQCDRWMHAVCQNLNTEEEVENVADIGFDCSMCR 1137
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 36.2 bits (82), Expect = 0.036
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 233 VTCFCMKPF-AGRPMIECNECHTWIHLSCAKIRKSNVPEV--FVCQKC 277
V C C P+ R MIEC+ C W H SC + + ++ + C C
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53
>gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens]
Length = 466
Score = 35.4 bits (80), Expect = 0.062
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 109 DRKKTDKLKKKKKR-KRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDP 167
+ K+T+ ++KK++R K +SD+ E + EA P P SP L+ +P+ +P
Sbjct: 310 ETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEP 369
Query: 168 CSGWDSDTPSSGSCATVSPDQVKEIKT--EGKRTIVRQGKQVVFRDEDSTGNDEDI 221
S SS +V + KT +G+ IV + V+ E T ++E++
Sbjct: 370 PS-----VKSSSGENKRKRKRVLKSKTYLDGEGCIV---TEKVYESESCTDSEEEL 417
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.062
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 73 GFSDIASSVPLPVS--DRCFSHLQPTLLQRAKPSNFLLDRKKTDK--LKKKKKRKRRDSD 128
G S ASS P P S D QP D ++ D+ ++ +++++ D++
Sbjct: 267 GSSSAASSPPPPASRLDDEDGDFQPQE-----------DEEEDDEETIEVEEQQEGNDAE 315
Query: 129 APGKEGYRGGLLKLEAADPYVETPTS--PTLQDIPQAPSDPCSGWDSDT---PSSGSCAT 183
A +E LL+ E P E S P L + P +PS S DSDT P G A
Sbjct: 316 AQRREIE---LLRREGELPLEELLRSLPPQLLEGPSSPSQTPSSHDSDTRDGPEEG--AE 370
Query: 184 VSPDQVKEIKTEGKRTIVRQGKQVVFRDEDS---TGNDEDIMVDSD 226
P QV EIK + ++ KQ DED T N+E+ + D
Sbjct: 371 EEPPQVLEIKPP-PSAVTQRNKQPWHPDEDDEEFTANEEEAEDEED 415
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 35.0 bits (79), Expect = 0.081
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 231 DLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRK-SNVPEVFVCQKCRDSK 281
D+ C C K A PMI+C C H SC + S +++C CR S+
Sbjct: 1175 DIKICLCQKAPAA-PMIQCELCRDAFHTSCVAVPSISQGLRIWLCPHCRRSE 1225
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 109 DRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPT---SPTLQDIPQAPS 165
D KT++ +K ++ R ++ P K RG + + P + P+ SP L P P+
Sbjct: 392 DEPKTEQTEKAEEETRMENSLPAKVPSRGDEMVADVQQPLSQIPSDTASPLLILPPPVPN 451
Query: 166 D-----PCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDE 219
P P GS +T D+ EG + + +Q +++V +DS +DE
Sbjct: 452 PSPTLRPVETPVVGAPGMGSVSTEPDDE------EGLKHLEQQAEKMVAYLQDSALDDE 504
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 109 DRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPT---SPTLQDIPQAPS 165
D KT++ +K ++ R ++ P K RG + + P + P+ SP L P P+
Sbjct: 419 DEPKTEQTEKAEEETRMENSLPAKVPSRGDEMVADVQQPLSQIPSDTASPLLILPPPVPN 478
Query: 166 D-----PCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDE 219
P P GS +T D+ EG + + +Q +++V +DS +DE
Sbjct: 479 PSPTLRPVETPVVGAPGMGSVSTEPDDE------EGLKHLEQQAEKMVAYLQDSALDDE 531
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 109 DRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPT---SPTLQDIPQAPS 165
D KT++ +K ++ R ++ P K RG + + P + P+ SP L P P+
Sbjct: 398 DEPKTEQTEKAEEETRMENSLPAKVPSRGDEMVADVQQPLSQIPSDTASPLLILPPPVPN 457
Query: 166 D-----PCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDE 219
P P GS +T D+ EG + + +Q +++V +DS +DE
Sbjct: 458 PSPTLRPVETPVVGAPGMGSVSTEPDDE------EGLKHLEQQAEKMVAYLQDSALDDE 510
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 109 DRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPT---SPTLQDIPQAPS 165
D KT++ +K ++ R ++ P K RG + + P + P+ SP L P P+
Sbjct: 398 DEPKTEQTEKAEEETRMENSLPAKVPSRGDEMVADVQQPLSQIPSDTASPLLILPPPVPN 457
Query: 166 D-----PCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDE 219
P P GS +T D+ EG + + +Q +++V +DS +DE
Sbjct: 458 PSPTLRPVETPVVGAPGMGSVSTEPDDE------EGLKHLEQQAEKMVAYLQDSALDDE 510
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 33.9 bits (76), Expect = 0.18
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 235 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKS------NVPEVFVCQKC 277
C C +P R MI C+ C W H C I ++ E ++C C
Sbjct: 271 CICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 319
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 33.9 bits (76), Expect = 0.18
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 235 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKS------NVPEVFVCQKC 277
C C +P R MI C+ C W H C I ++ E ++C C
Sbjct: 271 CICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 319
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 33.9 bits (76), Expect = 0.18
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 235 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKS------NVPEVFVCQKC 277
C C +P R MI C+ C W H C I ++ E ++C C
Sbjct: 271 CICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 319
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 33.9 bits (76), Expect = 0.18
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 235 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKS------NVPEVFVCQKC 277
C C +P R MI C+ C W H C I ++ E ++C C
Sbjct: 271 CICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 319
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.9 bits (76), Expect = 0.18
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 233 VTCFCMKPFAGRPMIECNECHTWIHLSCAK----IRKSNVPE-VFVCQKC 277
V C M +G ++EC ECH H C K +++N P V+ C +C
Sbjct: 163 VVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.9 bits (76), Expect = 0.18
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 233 VTCFCMKPFAGRPMIECNECHTWIHLSCAK----IRKSNVPE-VFVCQKC 277
V C M +G ++EC ECH H C K +++N P V+ C +C
Sbjct: 163 VVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|46048234 nucleolar protein 8 [Homo sapiens]
Length = 1167
Score = 33.9 bits (76), Expect = 0.18
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 92 HLQPTLLQRAKPSNFLLDRKKTDKLKKKKKRKRRDS-DAPGKEGYRGGLLKLE------- 143
H PT A D+ K K K+KKKR+ + KE Y + L+
Sbjct: 946 HYDPTKQDHATYERKRDDKPKESKAKRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 1005
Query: 144 -AADPYVETPTSPTL-QDIPQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRT-I 200
++ TP + ++ P+ DP + SG + K+IK E R
Sbjct: 1006 YTSEKEEGTPWNEDCGKEKPEEIQDPAALTSDAEQPSGFTFSFFDSDTKDIKEETYRVET 1065
Query: 201 VRQGKQVVFRD---EDSTGNDEDIMVDSD 226
V+ GK V D +DS+ +ED+ ++D
Sbjct: 1066 VKPGKIVWQEDPRLQDSSSEEEDVTEETD 1094
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,866,393
Number of Sequences: 37866
Number of extensions: 750212
Number of successful extensions: 3483
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 3345
Number of HSP's gapped (non-prelim): 210
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.