Guide to the Human Genome
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Name: TDRD9 Sequence: fasta or formatted (1382aa) NCBI GI: 166851804
Description:

tudor domain containing 9

Referenced in:

DEAD / H Helicase Family
Additional Interaction Domain Families
Oxygen Sensing and Hemoglobin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         86           3
 C cysteine            2.0         27           1
 D aspartate           4.5         62           2
 E glutamate           6.9         96           2
 F phenylalanine       4.1         56           2
 G glycine             5.4         74           2
 H histidine           2.6         36           2
 I isoleucine          5.4         74           3
 K lysine              5.9         82           2
 L leucine            11.1        153           3
 M methionine          2.1         29           1
 N asparagine          3.5         49           2
 P proline             5.2         72           2
 Q glutamine           4.7         65           2
 R arginine            5.0         69           2
 S serine              7.5        104           2
 T threonine           4.6         63           2
 V valine              8.8        122           2
 W tryptophan          1.1         15           1
 Y tyrosine            3.5         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tudor domain containing 9 
DHX57                 0.105   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
DHX9                  0.104   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
DHX29                 0.102   DEAH (Asp-Glu-Ala-His) box polypeptide 29 
DHX36                 0.100   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
DHX36                 0.096   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX34                 0.090   DEAH (Asp-Glu-Ala-His) box polypeptide 34 
DHX30                 0.088   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.088   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
DHX33                 0.083   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DHX40                 0.081   DEAH (Asp-Glu-Ala-His) box polypeptide 40 
DHX16                 0.078   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
LOC100134387          0.074   PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box po...
DHX8                  0.072   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
DHX38                 0.072   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
DHX15                 0.071   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
DHX35                 0.068   DEAH (Asp-Glu-Ala-His) box polypeptide 35 
YTHDC2                0.045   YTH domain containing 2 
DHX37                 0.036   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
DHX32                 0.033   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom...
DQX1                  0.018   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
TDRKH                 0.012   tudor and KH domain containing isoform a 
TDRKH                 0.012   tudor and KH domain containing isoform b 
TDRKH                 0.012   tudor and KH domain containing isoform a 
TDRKH                 0.012   tudor and KH domain containing isoform a 
TDRD6                 0.011   tudor domain containing 6 
AKAP1                 0.011   A-kinase anchor protein 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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