Guide to the Human Genome
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Name: DHX38 Sequence: fasta or formatted (1227aa) NCBI GI: 17999539
Description:

DEAH (Asp-Glu-Ala-His) box polypeptide 38

Referenced in:

DEAD / H Helicase Family
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         78           2
 C cysteine            1.2         15           1
 D aspartate           7.0         86           2
 E glutamate           9.5        116           3
 F phenylalanine       2.7         33           2
 G glycine             6.1         75           2
 H histidine           2.7         33           1
 I isoleucine          4.6         56           2
 K lysine              6.2         76           3
 L leucine             7.4         91           3
 M methionine          2.8         34           2
 N asparagine          2.6         32           3
 P proline             4.6         56           3
 Q glutamine           4.7         58           2
 R arginine            8.9        109           3
 S serine              7.9         97           2
 T threonine           4.9         60           3
 V valine              5.5         67           2
 W tryptophan          1.2         15           1
 Y tyrosine            3.3         40           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
DHX8                  0.301   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
DHX16                 0.271   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
DHX15                 0.225   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
DHX35                 0.218   DEAH (Asp-Glu-Ala-His) box polypeptide 35 
DHX33                 0.203   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DHX40                 0.192   DEAH (Asp-Glu-Ala-His) box polypeptide 40 
LOC100134387          0.140   PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box po...
DHX34                 0.134   DEAH (Asp-Glu-Ala-His) box polypeptide 34 
DHX32                 0.132   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom...
DQX1                  0.110   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
DHX36                 0.107   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
DHX29                 0.105   DEAH (Asp-Glu-Ala-His) box polypeptide 29 
DHX36                 0.100   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX30                 0.092   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.092   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
TDRD9                 0.080   tudor domain containing 9 
DHX57                 0.066   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
DHX37                 0.065   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
DHX9                  0.054   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
YTHDC2                0.054   YTH domain containing 2 
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
RBM25                 0.022   RNA binding motif protein 25 
ZC3H13                0.022   zinc finger CCCH-type containing 13 
SFRS12                0.020   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.020   splicing factor, arginine/serine-rich 12 isoform b [...
PRPF38B               0.018   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS11                0.017   splicing factor, arginine/serine-rich 11 
TCHH                  0.016   trichohyalin 
LOC100133599          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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