Guide to the Human Genome
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Name: LOC100129278 Sequence: fasta or formatted (2080aa) NCBI GI: 169163653
Description:

PREDICTED: similar to tudor domain containing 1

Not currently referenced in the text

Other entries for this name:
alt prot {2080aa} PREDICTED: similar to tudor domain containing 1
alt mRNA {2080aa} PREDICTED: similar to tudor domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8        100           2
 C cysteine            2.6         55           2
 D aspartate           4.7         98           2
 E glutamate           6.8        142           3
 F phenylalanine       5.0        104           2
 G glycine             3.8         80           1
 H histidine           2.0         41           2
 I isoleucine          6.9        143           2
 K lysine              7.8        162           2
 L leucine            10.7        222           4
 M methionine          1.8         37           1
 N asparagine          5.3        110           2
 P proline             5.1        107           4
 Q glutamine           4.4         91           2
 R arginine            3.8         80           3
 S serine              8.7        181           3
 T threonine           3.7         76           2
 V valine              6.6        138           2
 W tryptophan          1.5         31           1
 Y tyrosine            3.9         82           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to tudor domain containing 1 [Ho... 
LOC100129278          1.000   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          1.000   PREDICTED: similar to tudor domain containing 1 [Ho...
TDRD6                 0.131   tudor domain containing 6 
TDRD1                 0.027   tudor domain containing 1 
TDRD5                 0.013   tudor domain containing 5 
RNF17                 0.010   ring finger protein 17 
TDRKH                 0.008   tudor and KH domain containing isoform a 
TDRKH                 0.008   tudor and KH domain containing isoform b 
TDRKH                 0.008   tudor and KH domain containing isoform a 
TDRKH                 0.008   tudor and KH domain containing isoform a 
TDRD7                 0.008   tudor domain containing 7 
TDRD9                 0.008   tudor domain containing 9 
SND1                  0.005   staphylococcal nuclease domain containing 1 
TDRD12                0.005   tudor domain containing 12 
AKAP1                 0.004   A-kinase anchor protein 1 precursor 
STK31                 0.003   serine/threonine kinase 31 isoform b 
STK31                 0.003   serine/threonine kinase 31 isoform a 
STK31                 0.003   serine/threonine kinase 31 isoform b 
SPEG                  0.003   SPEG complex locus 
TDRD3                 0.003   tudor domain containing 3 isoform 2 
TDRD3                 0.003   tudor domain containing 3 isoform 1 
TDRD3                 0.003   tudor domain containing 3 isoform 2 
CCDC17                0.003   coiled-coil domain containing 17 
BRSK1                 0.002   BR serine/threonine kinase 1 
BRSK2                 0.002   BR serine/threonine kinase 2 
UTRN                  0.002   utrophin 
SLIT1                 0.002   slit homolog 1 
TRIML1                0.002   tripartite motif family-like 1 
PDIK1L                0.002   PDLIM1 interacting kinase 1 like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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