Guide to the Human Genome
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Name: YTHDC2 Sequence: fasta or formatted (1430aa) NCBI GI: 38505213
Description:

YTH domain containing 2

Referenced in:

DEAD / H Helicase Family
RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        103           3
 C cysteine            1.7         25           2
 D aspartate           5.2         74           2
 E glutamate           6.6         94           2
 F phenylalanine       4.1         59           1
 G glycine             5.9         84           7
 H histidine           2.2         32           2
 I isoleucine          5.0         72           3
 K lysine              6.1         87           3
 L leucine            10.3        147           3
 M methionine          2.5         36           2
 N asparagine          3.8         54           2
 P proline             5.3         76           3
 Q glutamine           4.5         65           2
 R arginine            6.6         95           2
 S serine              8.5        122           3
 T threonine           5.3         76           2
 V valine              5.9         84           2
 W tryptophan          1.5         21           1
 Y tyrosine            1.7         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YTH domain containing 2 
DHX36                 0.109   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
DHX36                 0.104   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX29                 0.093   DEAH (Asp-Glu-Ala-His) box polypeptide 29 
DHX57                 0.090   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
DHX9                  0.086   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
DHX30                 0.083   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.083   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
DHX34                 0.062   DEAH (Asp-Glu-Ala-His) box polypeptide 34 
DHX15                 0.057   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
DHX33                 0.048   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DHX8                  0.048   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
DHX16                 0.047   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
DHX35                 0.047   DEAH (Asp-Glu-Ala-His) box polypeptide 35 
DHX38                 0.047   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
DHX40                 0.044   DEAH (Asp-Glu-Ala-His) box polypeptide 40 
TDRD9                 0.044   tudor domain containing 9 
DHX37                 0.039   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
LOC100134387          0.038   PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box po...
YTHDC1                0.037   splicing factor YT521-B isoform 1 
YTHDC1                0.036   splicing factor YT521-B isoform 2 
DHX32                 0.029   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom...
DQX1                  0.022   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
YTHDF1                0.016   YTH domain family, member 1 
YTHDF3                0.015   YTH domain family, member 3 
YTHDF2                0.014   high glucose-regulated protein 8 
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subunit...
KIDINS220             0.008   kinase D-interacting substrate of 220 kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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