Guide to the Human Genome
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Name: SLC22A18 Sequence: fasta or formatted (424aa) NCBI GI: 166064060
Description:

tumor suppressing subtransferable candidate 5

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt mRNA [424aa] tumor suppressing subtransferable candidate 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         47           3
 C cysteine            1.9          8           1
 D aspartate           2.6         11           1
 E glutamate           1.4          6           2
 F phenylalanine       5.9         25           2
 G glycine             9.2         39           2
 H histidine           0.9          4           1
 I isoleucine          3.8         16           2
 K lysine              2.1          9           1
 L leucine            17.5         74           3
 M methionine          3.5         15           1
 N asparagine          0.7          3           1
 P proline             5.7         24           1
 Q glutamine           4.0         17           1
 R arginine            5.0         21           1
 S serine              8.0         34           2
 T threonine           5.4         23           2
 V valine              9.0         38           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor suppressing subtransferable candidate 5 [Homo... 
SLC22A18              1.000   tumor suppressing subtransferable candidate 5 [Homo...
MFSD9                 0.092   major facilitator superfamily domain containing 9 [...
MFSD10                0.052   major facilitator superfamily domain containing 10 ...
MFSD10                0.052   major facilitator superfamily domain containing 10 ...
C6orf192              0.044   hypothetical protein LOC116843 
HIAT1                 0.043   hippocampus abundant transcript 1 
MFSD8                 0.030   major facilitator superfamily domain containing 8 [H...
SLC18A3               0.023   vesicular acetylcholine transporter 
DIRC2                 0.021   disrupted in renal carcinoma 2 
SLC17A9               0.019   vesicular nucleotide transporter SLC17A9 
SLC22A12              0.018   urate anion exchanger 1 isoform a 
SPNS3                 0.016   spinster homolog 3 
SLC46A1               0.015   proton-coupled folate transporter 
SLC16A12              0.015   solute carrier family 16 (monocarboxylic acid trans...
SLC16A9               0.013   solute carrier family 16 (monocarboxylic acid transp...
SPNS1                 0.013   spinster homolog 1 isoform 3 
SPNS1                 0.013   spinster homolog 1 isoform 1 
SPNS1                 0.013   spinster homolog 1 isoform 1 
SLC16A4               0.010   solute carrier family 16, member 4 
SLC22A25              0.010   putative UST1-like organic anion transporter 
MFSD3                 0.010   major facilitator superfamily domain containing 3 [H...
SV2C                  0.009   synaptic vesicle glycoprotein 2C 
SLC2A8                0.009   solute carrier family 2 (facilitated glucose transpo...
CHD9                  0.009   chromodomain helicase DNA binding protein 9 
MFSD6                 0.008   major facilitator superfamily domain containing 6 [...
SLC22A8               0.008   solute carrier family 22 member 8 
SLC22A9               0.008   solute carrier family 22 (organic anion/cation trans...
SV2B                  0.008   synaptic vesicle protein 2B homolog 
SPNS1                 0.008   spinster homolog 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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