Guide to the Human Genome
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Name: SPNS1 Sequence: fasta or formatted (528aa) NCBI GI: 14042968
Description:

spinster homolog 1 isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt mRNA [528aa] spinster homolog 1 isoform 1
alt prot [454aa] spinster homolog 1 isoform 4
alt prot [455aa] spinster homolog 1 isoform 2
alt prot [476aa] spinster homolog 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         47           2
 C cysteine            1.5          8           1
 D aspartate           4.7         25           2
 E glutamate           3.0         16           2
 F phenylalanine       5.5         29           2
 G glycine             9.8         52           2
 H histidine           1.3          7           1
 I isoleucine          5.9         31           1
 K lysine              0.8          4           1
 L leucine            14.0         74           4
 M methionine          1.5          8           1
 N asparagine          1.9         10           1
 P proline             6.6         35           2
 Q glutamine           2.1         11           1
 R arginine            6.4         34           3
 S serine              9.1         48           3
 T threonine           4.7         25           1
 V valine              8.1         43           2
 W tryptophan          1.7          9           2
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spinster homolog 1 isoform 1 
SPNS1                 1.000   spinster homolog 1 isoform 1 
SPNS1                 0.871   spinster homolog 1 isoform 3 
SPNS1                 0.855   spinster homolog 1 isoform 2 
SPNS1                 0.817   spinster homolog 1 isoform 4 
SPNS2                 0.461   spinster homolog 2 
SPNS3                 0.449   spinster homolog 3 
SVOPL                 0.026   SVOP-like isoform 1 
SV2A                  0.024   synaptic vesicle glycoprotein 2 
SLC22A7               0.016   solute carrier family 22 member 7 isoform b 
SLC22A7               0.016   solute carrier family 22 member 7 isoform a 
SLC2A8                0.015   solute carrier family 2 (facilitated glucose transpo...
SLC22A15              0.014   solute carrier family 22, member 15 
SLC17A9               0.014   vesicular nucleotide transporter SLC17A9 
SLCO5A1               0.014   solute carrier organic anion transporter family, me...
SLCO5A1               0.014   solute carrier organic anion transporter family, me...
SLCO5A1               0.014   solute carrier organic anion transporter family, me...
SLC18A3               0.014   vesicular acetylcholine transporter 
SLC22A13              0.013   solute carrier family 22 (organic anion transporter...
SLC17A3               0.012   solute carrier family 17 (sodium phosphate), member...
SLC22A1               0.012   solute carrier family 22 member 1 isoform b 
SLC22A1               0.012   solute carrier family 22 member 1 isoform a 
SV2B                  0.010   synaptic vesicle protein 2B homolog 
SLC17A4               0.010   solute carrier family 17 (sodium phosphate), member 4...
SLC2A12               0.010   solute carrier family 2 (facilitated glucose transpo...
SLC22A18              0.010   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.010   tumor suppressing subtransferable candidate 5 [Homo...
MFSD10                0.009   major facilitator superfamily domain containing 10 ...
MFSD10                0.009   major facilitator superfamily domain containing 10 ...
SLC17A5               0.009   sialin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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