Guide to the Human Genome
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Name: SV2B Sequence: fasta or formatted (683aa) NCBI GI: 7662270
Description:

synaptic vesicle protein 2B homolog

Referenced in:

Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         46           3
 C cysteine            2.2         15           2
 D aspartate           5.0         34           2
 E glutamate           6.1         42           2
 F phenylalanine       7.6         52           2
 G glycine             8.3         57           3
 H histidine           2.3         16           1
 I isoleucine          6.1         42           2
 K lysine              4.5         31           2
 L leucine             9.2         63           2
 M methionine          5.0         34           2
 N asparagine          3.4         23           1
 P proline             2.8         19           1
 Q glutamine           3.2         22           1
 R arginine            3.5         24           1
 S serine              6.6         45           3
 T threonine           4.8         33           1
 V valine              6.0         41           2
 W tryptophan          2.0         14           1
 Y tyrosine            4.4         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptic vesicle protein 2B homolog 
SV2A                  0.631   synaptic vesicle glycoprotein 2 
SV2C                  0.596   synaptic vesicle glycoprotein 2C 
SVOP                  0.069   SV2 related protein 
SVOPL                 0.058   SVOP-like isoform 1 
SLC22A5               0.039   solute carrier family 22 member 5 
SLC22A15              0.034   solute carrier family 22, member 15 
SLC22A7               0.033   solute carrier family 22 member 7 isoform b 
SLC22A7               0.033   solute carrier family 22 member 7 isoform a 
SLC22A4               0.033   solute carrier family 22 member 4 
SLC22A8               0.031   solute carrier family 22 member 8 
SLC2A8                0.030   solute carrier family 2 (facilitated glucose transpo...
SLC22A2               0.030   solute carrier family 22 member 2 
SLC22A13              0.029   solute carrier family 22 (organic anion transporter...
SLC22A1               0.026   solute carrier family 22 member 1 isoform b 
SLC22A1               0.026   solute carrier family 22 member 1 isoform a 
SLC2A13               0.025   solute carrier family 2 (facilitated glucose transp...
SLC22A20              0.025   solute carrier family 22, member 20 
SLC2A6                0.025   solute carrier family 2 (facilitated glucose transp...
SLC2A6                0.025   solute carrier family 2 (facilitated glucose transp...
SLC22A6               0.025   solute carrier family 22 member 6 isoform d 
SLC22A6               0.025   solute carrier family 22 member 6 isoform c 
SLC22A6               0.025   solute carrier family 22 member 6 isoform b 
SLC22A6               0.025   solute carrier family 22 member 6 isoform a 
SLC22A3               0.023   solute carrier family 22 member 3 
SVOPL                 0.022   SVOP-like isoform 2 
SLC22A14              0.022   organic cation transporter like 4 
SLC22A11              0.022   solute carrier family 22 member 11 
SLC2A11               0.020   glucose transporter protein 10 isoform a 
SLC2A11               0.020   glucose transporter protein 10 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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