Guide to the Human Genome
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Name: MFSD6 Sequence: fasta or formatted (791aa) NCBI GI: 144953907
Description:

major facilitator superfamily domain containing 6

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         50           3
 C cysteine            1.6         13           1
 D aspartate           3.7         29           2
 E glutamate           6.6         52           3
 F phenylalanine       4.7         37           3
 G glycine             6.1         48           2
 H histidine           2.1         17           1
 I isoleucine          6.2         49           2
 K lysine              3.8         30           2
 L leucine             9.7         77           3
 M methionine          2.4         19           2
 N asparagine          3.7         29           2
 P proline             6.4         51           2
 Q glutamine           4.6         36           3
 R arginine            3.8         30           1
 S serine              7.7         61           3
 T threonine           7.7         61           3
 V valine              7.8         62           3
 W tryptophan          1.6         13           1
 Y tyrosine            3.4         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major facilitator superfamily domain containing 6 [... 
MFSD6L                0.045   major facilitator superfamily domain containing 6-li...
LOC100294420          0.010   PREDICTED: similar to mucin 2 
LOC730474             0.009   PREDICTED: hypothetical protein, partial 
MUC2                  0.008   mucin 2 precursor 
MUC3A                 0.007   PREDICTED: mucin 3A, intestinal 
ZBTB17                0.007   zinc finger and BTB domain containing 17 
LOC100133790          0.007   PREDICTED: intestinal mucin-like, partial 
LOC284297             0.006   hypothetical protein LOC284297 
LOC100131514          0.006   PREDICTED: similar to hCG1747327, partial 
LOC730474             0.006   PREDICTED: hypothetical protein 
MUC5AC                0.006   mucin 5AC 
SLC12A5               0.006   solute carrier family 12 (potassium-chloride transp...
SLC12A5               0.006   solute carrier family 12 (potassium-chloride transpo...
MUC5B                 0.006   mucin 5, subtype B, tracheobronchial 
SLC16A7               0.006   solute carrier family 16, member 7 
LOC732156             0.006   PREDICTED: similar to Mucin-3A 
SLC46A2               0.006   solute carrier family 46, member 2 
C6orf192              0.006   hypothetical protein LOC116843 
GPR152                0.006   G protein-coupled receptor 152 
PHC2                  0.005   polyhomeotic-like 2 isoform a 
LOC100131251          0.005   PREDICTED: hypothetical protein 
LOC100131251          0.005   PREDICTED: hypothetical protein 
NACAD                 0.005   NAC alpha domain containing 
HAVCR1                0.005   hepatitis A virus cellular receptor 1 
HAVCR1                0.005   hepatitis A virus cellular receptor 1 
NACAD                 0.005   PREDICTED: NAC alpha domain containing 
ATXN2L                0.005   ataxin 2 related protein isoform B 
ATXN2L                0.005   ataxin 2 related protein isoform E 
ATXN2L                0.005   ataxin 2 related protein isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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