Guide to the Human Genome
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Name: SV2C Sequence: fasta or formatted (727aa) NCBI GI: 73695465
Description:

synaptic vesicle glycoprotein 2C

Referenced in:

Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         41           3
 C cysteine            2.5         18           1
 D aspartate           6.1         44           4
 E glutamate           6.2         45           3
 F phenylalanine       7.6         55           2
 G glycine             8.3         60           2
 H histidine           1.2          9           1
 I isoleucine          5.9         43           2
 K lysine              4.4         32           2
 L leucine             8.5         62           2
 M methionine          3.4         25           2
 N asparagine          3.6         26           1
 P proline             2.8         20           1
 Q glutamine           2.9         21           2
 R arginine            4.4         32           2
 S serine              7.2         52           2
 T threonine           5.8         42           1
 V valine              7.3         53           2
 W tryptophan          2.2         16           1
 Y tyrosine            4.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptic vesicle glycoprotein 2C 
SV2A                  0.624   synaptic vesicle glycoprotein 2 
SV2B                  0.560   synaptic vesicle protein 2B homolog 
SVOP                  0.067   SV2 related protein 
SVOPL                 0.053   SVOP-like isoform 1 
SLC22A5               0.044   solute carrier family 22 member 5 
SLC22A4               0.031   solute carrier family 22 member 4 
SLC22A7               0.031   solute carrier family 22 member 7 isoform a 
SLC22A7               0.030   solute carrier family 22 member 7 isoform b 
SLC2A8                0.030   solute carrier family 2 (facilitated glucose transpo...
SLC22A15              0.028   solute carrier family 22, member 15 
SLC22A13              0.028   solute carrier family 22 (organic anion transporter...
SLC2A6                0.025   solute carrier family 2 (facilitated glucose transp...
SLC2A6                0.025   solute carrier family 2 (facilitated glucose transp...
SLC22A14              0.024   organic cation transporter like 4 
SLC22A3               0.022   solute carrier family 22 member 3 
SLC22A1               0.022   solute carrier family 22 member 1 isoform a 
SLC22A2               0.022   solute carrier family 22 member 2 
SVOPL                 0.022   SVOP-like isoform 2 
SLC22A16              0.022   solute carrier family 22, member 16 
SLC2A13               0.020   solute carrier family 2 (facilitated glucose transp...
SLC22A11              0.020   solute carrier family 22 member 11 
SLC22A1               0.019   solute carrier family 22 member 1 isoform b 
SLC2A12               0.019   solute carrier family 2 (facilitated glucose transpo...
SLC22A6               0.018   solute carrier family 22 member 6 isoform d 
SLC22A6               0.018   solute carrier family 22 member 6 isoform c 
SLC22A6               0.018   solute carrier family 22 member 6 isoform b 
SLC22A6               0.018   solute carrier family 22 member 6 isoform a 
SLC22A8               0.018   solute carrier family 22 member 8 
SLC2A3                0.018   solute carrier family 2 (facilitated glucose transpor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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