Guide to the Human Genome
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Name: SLC18A3 Sequence: fasta or formatted (532aa) NCBI GI: 118582257
Description:

vesicular acetylcholine transporter

Referenced in:

Acetylcholine
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         75           3
 C cysteine            1.3          7           1
 D aspartate           3.8         20           2
 E glutamate           4.3         23           2
 F phenylalanine       3.9         21           1
 G glycine             7.3         39           3
 H histidine           1.5          8           1
 I isoleucine          4.3         23           1
 K lysine              1.3          7           1
 L leucine            13.7         73           4
 M methionine          2.4         13           1
 N asparagine          1.7          9           1
 P proline             8.1         43           2
 Q glutamine           1.7          9           1
 R arginine            5.6         30           2
 S serine              6.6         35           2
 T threonine           4.3         23           2
 V valine              8.6         46           2
 W tryptophan          1.1          6           1
 Y tyrosine            4.1         22           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vesicular acetylcholine transporter 
SLC18A1               0.306   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.306   solute carrier family 18 (vesicular monoamine), membe...
SLC18A2               0.304   solute carrier family 18 (vesicular monoamine), memb...
SLC18A1               0.281   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.260   solute carrier family 18 (vesicular monoamine), mem...
C6orf192              0.060   hypothetical protein LOC116843 
SLC22A18              0.018   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.018   tumor suppressing subtransferable candidate 5 [Homo...
MFSD10                0.014   major facilitator superfamily domain containing 10 ...
MFSD10                0.014   major facilitator superfamily domain containing 10 ...
SPNS1                 0.014   spinster homolog 1 isoform 2 
SPNS1                 0.014   spinster homolog 1 isoform 1 
SPNS1                 0.014   spinster homolog 1 isoform 1 
SLC16A2               0.012   solute carrier family 16, member 2 
SPNS1                 0.012   spinster homolog 1 isoform 3 
SPNS1                 0.012   spinster homolog 1 isoform 4 
SLC17A5               0.010   sialin 
SLC17A3               0.010   solute carrier family 17 (sodium phosphate), member...
SLC17A7               0.010   solute carrier family 17, member 7 
SLC16A14              0.009   solute carrier family 16 (monocarboxylic acid transp...
SLC22A1               0.008   solute carrier family 22 member 1 isoform b 
SLC22A1               0.008   solute carrier family 22 member 1 isoform a 
LOC100293848          0.008   PREDICTED: hypothetical protein 
LOC100290829          0.008   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.008   PREDICTED: hypothetical protein XP_002342360 
MUC16                 0.007   mucin 16 
MFSD8                 0.007   major facilitator superfamily domain containing 8 [H...
PCSK4                 0.007   proprotein convertase subtilisin/kexin type 4 
SLC17A9               0.007   vesicular nucleotide transporter SLC17A9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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