Guide to the Human Genome
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Search of human proteins with 164698426

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|164698426 hypothetical protein LOC122945 isoform 1 [Homo
sapiens]
         (359 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|164698426 hypothetical protein LOC122945 isoform 1 [Homo sapi...   728   0.0  
gi|20302040 hypothetical protein LOC122945 isoform 2 [Homo sapiens]   462   e-130
gi|24797097 pyrroline-5-carboxylate reductase 1 isoform 1 [Homo ...    52   8e-07
gi|24797095 pyrroline-5-carboxylate reductase 1 isoform 2 [Homo ...    52   8e-07
gi|198041662 pyrroline-5-carboxylate reductase-like [Homo sapiens]     48   1e-05
gi|21361454 pyrroline-5-carboxylate reductase family, member 2 [...    44   2e-04
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi...    33   0.40 
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap...    33   0.40 
gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapi...    33   0.40 
gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapi...    33   0.40 
gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapi...    33   0.40 
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi...    33   0.40 
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi...    33   0.40 
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi...    33   0.40 
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi...    33   0.40 
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi...    33   0.40 
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi...    33   0.40 
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi...    33   0.40 
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]          33   0.40 
gi|63003897 transcription factor NRF [Homo sapiens]                    30   4.4  
gi|56549147 dudulin 2 isoform b [Homo sapiens]                         29   5.7  
gi|56549145 dudulin 2 isoform a [Homo sapiens]                         29   5.7  
gi|59853425 dudulin 2 isoform b [Homo sapiens]                         29   5.7  
gi|16507200 ubiquitin specific protease 28 [Homo sapiens]              29   5.7  
gi|83367077 mucin 16 [Homo sapiens]                                    29   7.5  
gi|183227703 mitochondrial translation optimization 1 homolog is...    28   9.7  
gi|19882217 mitochondrial translation optimization 1 homolog iso...    28   9.7  
gi|74024895 mitochondrial translation optimization 1 homolog iso...    28   9.7  
gi|217272839 choline dehydrogenase [Homo sapiens]                      28   9.7  

>gi|164698426 hypothetical protein LOC122945 isoform 1 [Homo
           sapiens]
          Length = 359

 Score =  728 bits (1879), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)

Query: 1   MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
           MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS
Sbjct: 1   MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60

Query: 61  SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
           SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ
Sbjct: 61  SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120

Query: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
           KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL
Sbjct: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180

Query: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGGIILNIKWLEGV 240
           LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGGIILNIKWLEGV
Sbjct: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGGIILNIKWLEGV 240

Query: 241 FYAALNICTARNMAHSQVLQLLSELFLSVHFEDCGKDTASCPKLQLTDFVSKAYGKNLSQ 300
           FYAALNICTARNMAHSQVLQLLSELFLSVHFEDCGKDTASCPKLQLTDFVSKAYGKNLSQ
Sbjct: 241 FYAALNICTARNMAHSQVLQLLSELFLSVHFEDCGKDTASCPKLQLTDFVSKAYGKNLSQ 300

Query: 301 ERPFPWFDLTAVQLKETPFSQHLSSSPVLQDHLTHLYCASFGISLTKEQPVISTGFPSQ 359
           ERPFPWFDLTAVQLKETPFSQHLSSSPVLQDHLTHLYCASFGISLTKEQPVISTGFPSQ
Sbjct: 301 ERPFPWFDLTAVQLKETPFSQHLSSSPVLQDHLTHLYCASFGISLTKEQPVISTGFPSQ 359


>gi|20302040 hypothetical protein LOC122945 isoform 2 [Homo sapiens]
          Length = 250

 Score =  462 bits (1190), Expect = e-130
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
           MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS
Sbjct: 1   MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60

Query: 61  SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
           SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ
Sbjct: 61  SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120

Query: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
           KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL
Sbjct: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180

Query: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG 228
           LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG
Sbjct: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG 228


>gi|24797097 pyrroline-5-carboxylate reductase 1 isoform 1 [Homo
           sapiens]
          Length = 319

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 79  VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE--TLGELQKLGIKCFYHNADLVSW 136
           VG IG G L   LA      G + A  +  S+   +  T+  L+K+G+K   HN + V  
Sbjct: 3   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query: 137 ADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLN 183
           +DV+FL   P  +P I  EI   +E   IV S  A + +  ++  L+
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLS 109


>gi|24797095 pyrroline-5-carboxylate reductase 1 isoform 2 [Homo
           sapiens]
          Length = 316

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 79  VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE--TLGELQKLGIKCFYHNADLVSW 136
           VG IG G L   LA      G + A  +  S+   +  T+  L+K+G+K   HN + V  
Sbjct: 3   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query: 137 ADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLN 183
           +DV+FL   P  +P I  EI   +E   IV S  A + +  ++  L+
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLS 109


>gi|198041662 pyrroline-5-carboxylate reductase-like [Homo sapiens]
          Length = 286

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 71  SATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQKLGIKCFYHN 130
           +A P   +VG +G G +   +A  L++ G + A+ +  S      L   Q LG +  + N
Sbjct: 15  AAEPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSN 74

Query: 131 ADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRL-KLLLNHTNILR 189
            +++    ++     P  LP +  E+   +    I+ S  A + L  L +LL  +T +LR
Sbjct: 75  QEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLR 134


>gi|21361454 pyrroline-5-carboxylate reductase family, member 2
           [Homo sapiens]
          Length = 320

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 79  VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE----TLGELQKLGIKCFYHNADLV 134
           VG IG G L   LA      G + A  +  S+  PE    T+  L+K+G+     N + V
Sbjct: 3   VGFIGAGQLAYALARGFTAAGILSAHKIIASS--PEMNLPTVSALRKMGVNLTRSNKETV 60

Query: 135 SWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPL 175
             +DV+FL   P  +P I  EI   ++   IV S  A + +
Sbjct: 61  KHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTI 101


>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
          Length = 1955

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393


>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
          Length = 1932

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1299 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1358

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1359 AFIIILCCIPAIL 1371


>gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapiens]
          Length = 1677

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393


>gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapiens]
          Length = 1682

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1326 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1385

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1386 AFIIILCCIPAIL 1398


>gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapiens]
          Length = 1539

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393


>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
          Length = 1790

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1333 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1392

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1393 AFIIILCCIPAIL 1405


>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
          Length = 1935

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1299 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1358

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1359 AFIIILCCIPAIL 1371


>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
          Length = 1915

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1284 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1343

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1344 AFIIILCCIPAIL 1356


>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
          Length = 1952

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393


>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
          Length = 1886

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1250 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1309

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1310 AFIIILCCIPAIL 1322


>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
          Length = 1957

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393


>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
          Length = 1962

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 82   IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
            I    L K L G LL +     P   E  RI   R PE +  ++K G    Y    L++ 
Sbjct: 1326 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1385

Query: 137  ADVIFLCCLPSQL 149
            A +I LCC+P+ L
Sbjct: 1386 AFIIILCCIPAIL 1398


>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
          Length = 553

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 71  SATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQKLGIKCFYHN 130
           S TP + K+G +G G +G  +   LL++G     ++ +  R  E      + G +     
Sbjct: 262 SITPTDKKIGFLGLGLMGSGIVSNLLKMG----HTVTVWNRTAEKCDLFIQEGARLGRTP 317

Query: 131 ADLVSWADVIFLC 143
           A++VS  D+ F C
Sbjct: 318 AEVVSTCDITFAC 330


>gi|63003897 transcription factor NRF [Homo sapiens]
          Length = 690

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 18/81 (22%)

Query: 282 PKLQLTDFVSKAYGKNLSQERPFPWFDLTAVQLKETPFSQHLSSSP--VLQDHL------ 333
           P+ +   FV+ +  K+  QE P+        Q KE     H +S P  + QD+       
Sbjct: 55  PRFEPVHFVASS-SKDERQEDPY------GPQTKEVNEQTHFASMPRDIYQDYTQDSFSI 107

Query: 334 ---THLYCASFGISLTKEQPV 351
                 YC S G  LTK+QPV
Sbjct: 108 QDGNSQYCDSSGFILTKDQPV 128


>gi|56549147 dudulin 2 isoform b [Homo sapiens]
          Length = 488

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 55  LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
           ++K   S HL  S  SL     E  KVGI+G G   + LA  L+  G      + + +R 
Sbjct: 5   MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 60

Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
           P+    L     +  +   + VS  +VIF+        ++C
Sbjct: 61  PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 100


>gi|56549145 dudulin 2 isoform a [Homo sapiens]
          Length = 498

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 55  LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
           ++K   S HL  S  SL     E  KVGI+G G   + LA  L+  G      + + +R 
Sbjct: 15  MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 70

Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
           P+    L     +  +   + VS  +VIF+        ++C
Sbjct: 71  PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 110


>gi|59853425 dudulin 2 isoform b [Homo sapiens]
          Length = 488

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 55  LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
           ++K   S HL  S  SL     E  KVGI+G G   + LA  L+  G      + + +R 
Sbjct: 5   MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 60

Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
           P+    L     +  +   + VS  +VIF+        ++C
Sbjct: 61  PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 100


>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
          Length = 1077

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 234 IKWLEGVFYAALNICTARNMAHSQVLQLLSELFLSVHFED----CGKDTASCPKLQLTDF 289
           + WLE  F  A+N+ + RN + + ++QL    FL+    +    C  +T     LQ+  +
Sbjct: 264 LDWLEDAFQLAVNVNSPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGY 323


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/81 (28%), Positives = 32/81 (39%)

Query: 278  TASCPKLQLTDFVSKAYGKNLSQERPFPWFDLTAVQLKETPFSQHLSSSPVLQDHLTHLY 337
            T+S P L  T     A  + ++          TAV    T  S H S S VL D  T + 
Sbjct: 9780 TSSSPNLSSTSVEIPATSEIMTDTEKIHPSSNTAVAKVRTSSSVHESHSSVLADSETTIT 9839

Query: 338  CASFGISLTKEQPVISTGFPS 358
              S GI+   +   + T  P+
Sbjct: 9840 IPSMGITSAVDDTTVFTSNPA 9860


>gi|183227703 mitochondrial translation optimization 1 homolog
           isoform c [Homo sapiens]
          Length = 732

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 68  SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
           S +SA P    F V +IGGGH G + A    + G        + T R +T+G++
Sbjct: 26  SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75


>gi|19882217 mitochondrial translation optimization 1 homolog
           isoform b [Homo sapiens]
          Length = 717

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 68  SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
           S +SA P    F V +IGGGH G + A    + G        + T R +T+G++
Sbjct: 26  SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75


>gi|74024895 mitochondrial translation optimization 1 homolog
           isoform a [Homo sapiens]
          Length = 692

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 68  SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
           S +SA P    F V +IGGGH G + A    + G        + T R +T+G++
Sbjct: 26  SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75


>gi|217272839 choline dehydrogenase [Homo sapiens]
          Length = 594

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 52  RASLNKNQSSRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTR 111
           R +L + QS    ++ S  S + +E+   ++G G  G  LAG L +    PAE + +   
Sbjct: 16  RGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLTE---DPAERVLLLEA 72

Query: 112 RPE 114
            P+
Sbjct: 73  GPK 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,081,084
Number of Sequences: 37866
Number of extensions: 623035
Number of successful extensions: 1220
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 36
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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