Guide to the Human Genome
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Name: C1orf25 Sequence: fasta or formatted (733aa) NCBI GI: 163792194
Description:

N2,N2-dimethylguanosine tRNA methyltransferase-like

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         63           3
 C cysteine            2.9         21           1
 D aspartate           4.6         34           2
 E glutamate           6.8         50           3
 F phenylalanine       3.4         25           1
 G glycine             4.6         34           2
 H histidine           3.5         26           2
 I isoleucine          5.3         39           2
 K lysine              7.0         51           2
 L leucine             8.5         62           2
 M methionine          2.6         19           1
 N asparagine          5.5         40           1
 P proline             5.2         38           2
 Q glutamine           3.8         28           1
 R arginine            5.0         37           2
 S serine              7.6         56           3
 T threonine           5.7         42           3
 V valine              6.1         45           3
 W tryptophan          0.7          5           1
 Y tyrosine            2.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N2,N2-dimethylguanosine tRNA methyltransferase-like... 
TRMT1                 0.036   tRNA methyltransferase 1 isoform 1 
TRMT1                 0.036   tRNA methyltransferase 1 isoform 1 
TRMT1                 0.032   tRNA methyltransferase 1 isoform 2 
CDKN1C                0.017   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.017   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.017   cyclin-dependent kinase inhibitor 1C isoform a 
MAP7                  0.017   microtubule-associated protein 7 
RELA                  0.015   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.015   v-rel reticuloendotheliosis viral oncogene homolog ...
UBE2O                 0.015   ubiquitin-conjugating enzyme E2O 
RALGDS                0.015   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.015   ral guanine nucleotide dissociation stimulator isof...
EIF3F                 0.014   eukaryotic translation initiation factor 3, subunit 5...
AMOT                  0.014   angiomotin isoform 2 
AMOT                  0.014   angiomotin isoform 1 
BAT2D1                0.014   HBxAg transactivated protein 2 
BCORL1                0.013   BCL6 co-repressor-like 1 
DGKK                  0.012   diacylglycerol kinase kappa 
KAT2A                 0.012   general control of amino acid synthesis 5-like 2 [H...
FMNL1                 0.012   formin-like 1 
SAMD1                 0.012   sterile alpha motif domain containing 1 
NISCH                 0.012   nischarin 
TBC1D10B              0.011   TBC1 domain family, member 10B 
FAM48B1               0.011   hypothetical protein LOC100130302 
SRCAP                 0.011   Snf2-related CBP activator protein 
C15orf39              0.011   hypothetical protein LOC56905 
COL27A1               0.010   collagen, type XXVII, alpha 1 
GGN                   0.010   gametogenetin 
MYL4                  0.010   atrial/embryonic alkali myosin light chain 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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