Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRMT1 Sequence: fasta or formatted (659aa) NCBI GI: 8923219
Description:

tRNA methyltransferase 1 isoform 1

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [659aa] tRNA methyltransferase 1 isoform 1
alt prot [630aa] tRNA methyltransferase 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         72           3
 C cysteine            3.2         21           2
 D aspartate           4.4         29           1
 E glutamate           7.3         48           3
 F phenylalanine       3.8         25           2
 G glycine             6.7         44           2
 H histidine           2.1         14           1
 I isoleucine          2.9         19           1
 K lysine              3.8         25           1
 L leucine             8.6         57           2
 M methionine          1.5         10           1
 N asparagine          3.0         20           1
 P proline             6.7         44           2
 Q glutamine           4.9         32           1
 R arginine            8.2         54           3
 S serine              7.3         48           2
 T threonine           4.6         30           2
 V valine              7.6         50           3
 W tryptophan          0.9          6           1
 Y tyrosine            1.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA methyltransferase 1 isoform 1 
TRMT1                 1.000   tRNA methyltransferase 1 isoform 1 
TRMT1                 0.942   tRNA methyltransferase 1 isoform 2 
C1orf25               0.041   N2,N2-dimethylguanosine tRNA methyltransferase-like...
SMARCC1               0.008   SWI/SNF-related matrix-associated actin-dependent r...
ZNF831                0.008   zinc finger protein 831 
MAP3K8                0.008   mitogen-activated protein kinase kinase kinase 8 [Ho...
MKRN1                 0.008   makorin ring finger protein 1 isoform 2 
MKRN1                 0.008   makorin ring finger protein 1 isoform 1 
LYAR                  0.006   Ly1 antibody reactive homolog 
LYAR                  0.006   Ly1 antibody reactive homolog 
MAGI1                 0.006   membrane associated guanylate kinase, WW and PDZ dom...
ZC3H8                 0.006   zinc finger CCCH-type containing 8 
MKRN3                 0.005   makorin ring finger protein 3 
PPP1R12C              0.005   protein phosphatase 1, regulatory subunit 12C 
ZC3H15                0.005   erythropoietin 4 immediate early response 
CNGB1                 0.005   cyclic nucleotide gated channel beta 1 isoform a [H...
TAF4                  0.005   TBP-associated factor 4 
TTBK1                 0.005   tau tubulin kinase 1 
FNBP4                 0.005   formin binding protein 4 
PHF15                 0.005   PHD finger protein 15 
LOC100293005          0.005   PREDICTED: hypothetical protein 
LOC100133280          0.005   PREDICTED: similar to Putative POM121-like protein ...
ZNF469                0.005   zinc finger protein 469 
PGLYRP2               0.005   peptidoglycan recognition protein 2 precursor [Homo...
GSPT1                 0.005   G1 to S phase transition 1 isoform 2 
GSPT1                 0.005   G1 to S phase transition 1 isoform 1 
SPEG                  0.005   SPEG complex locus 
ZC3H4                 0.005   zinc finger CCCH-type containing 4 
MKRN2                 0.005   makorin ring finger protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press