Guide to the Human Genome
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Name: RELA Sequence: fasta or formatted (548aa) NCBI GI: 223468681
Description:

v-rel reticuloendotheliosis viral oncogene homolog A isoform 2

Referenced in:

NF-kappaB Pathway

Other entries for this name:
alt prot [551aa] v-rel reticuloendotheliosis viral oncogene homolog A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         47           1
 C cysteine            1.6          9           1
 D aspartate           6.0         33           2
 E glutamate           5.8         32           2
 F phenylalanine       4.2         23           1
 G glycine             5.8         32           2
 H histidine           1.6          9           1
 I isoleucine          4.6         25           2
 K lysine              3.3         18           2
 L leucine             7.8         43           2
 M methionine          1.8         10           1
 N asparagine          2.7         15           3
 P proline            13.1         72           3
 Q glutamine           5.8         32           2
 R arginine            6.6         36           2
 S serine              7.7         42           2
 T threonine           5.1         28           2
 V valine              5.3         29           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   v-rel reticuloendotheliosis viral oncogene homolog ... 
RELA                  0.995   v-rel reticuloendotheliosis viral oncogene homolog ...
REL                   0.320   v-rel reticuloendotheliosis viral oncogene homolog [H...
RELB                  0.270   reticuloendotheliosis viral oncogene homolog B [Homo...
NFKB2                 0.202   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.202   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.202   nuclear factor of kappa light polypeptide gene enha...
NFKB1                 0.191   nuclear factor kappa-B, subunit 1 
CDKN1C                0.039   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.039   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.039   cyclin-dependent kinase inhibitor 1C isoform a 
NFATC1                0.034   nuclear factor of activated T-cells, cytosolic compo...
NFATC3                0.034   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.034   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.034   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.034   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC1                0.033   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.033   nuclear factor of activated T-cells, cytosolic compo...
SAMD1                 0.031   sterile alpha motif domain containing 1 
BAT2D1                0.031   HBxAg transactivated protein 2 
BCORL1                0.029   BCL6 co-repressor-like 1 
SRCAP                 0.027   Snf2-related CBP activator protein 
C15orf39              0.027   hypothetical protein LOC56905 
PRR12                 0.027   proline rich 12 
NFATC1                0.027   nuclear factor of activated T-cells, cytosolic compo...
RALGDS                0.027   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.027   ral guanine nucleotide dissociation stimulator isof...
DGKK                  0.027   diacylglycerol kinase kappa 
SF3A1                 0.025   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.025   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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