Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TSGA14 Sequence: fasta or formatted (373aa) NCBI GI: 16306479
Description:

testis specific, 14

Referenced in:

Centrosome
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         26           2
 C cysteine            1.1          4           1
 D aspartate           5.6         21           3
 E glutamate           7.0         26           3
 F phenylalanine       2.1          8           1
 G glycine             7.2         27           3
 H histidine           2.1          8           1
 I isoleucine          4.6         17           3
 K lysine              7.5         28           2
 L leucine             9.1         34           3
 M methionine          1.6          6           1
 N asparagine          4.8         18           2
 P proline             8.0         30           2
 Q glutamine           5.1         19           2
 R arginine            5.9         22           2
 S serine              9.4         35           2
 T threonine           4.8         18           2
 V valine              2.7         10           1
 W tryptophan          0.5          2           1
 Y tyrosine            3.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis specific, 14 
TCP10L2               0.016   t-complex 10-like 2 
LOC100290551          0.015   PREDICTED: hypothetical protein XP_002346417 
LOC100287437          0.015   PREDICTED: hypothetical protein XP_002342117 
TBCKL                 0.015   TBC domain-containing protein kinase-like 
SCARF1                0.012   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.012   scavenger receptor class F, member 1 isoform 5 prec...
TCHP                  0.012   trichoplein 
TCHP                  0.012   trichoplein 
TCP10                 0.012   t-complex 10 
GORASP1               0.011   Golgi reassembly stacking protein 1 
CASC4                 0.011   cancer susceptibility candidate 4 isoform b 
CASC4                 0.011   cancer susceptibility candidate 4 isoform a 
XPC                   0.010   xeroderma pigmentosum, complementation group C isof...
XPC                   0.010   xeroderma pigmentosum, complementation group C isof...
PMS2                  0.010   PMS2 postmeiotic segregation increased 2 isoform a [H...
LOC100293652          0.010   PREDICTED: hypothetical protein 
LOC100291016          0.010   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.010   PREDICTED: hypothetical protein XP_002343597 
CDC42BPG              0.010   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
UBE4B                 0.010   ubiquitination factor E4B isoform 1 
BCL6B                 0.010   B-cell CLL/lymphoma 6, member B (zinc finger protein...
PCDHGA4               0.010   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.010   protocadherin gamma subfamily A, 4 isoform 1 precurs...
MLL                   0.008   myeloid/lymphoid or mixed-lineage leukemia protein [...
CCDC22                0.008   coiled-coil domain containing 22 
MAMLD1                0.008   mastermind-like domain containing 1 
FBLN2                 0.008   fibulin 2 isoform b precursor 
FBLN2                 0.008   fibulin 2 isoform a precursor 
C14orf93              0.008   hypothetical protein LOC60686 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press