Guide to the Human Genome
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Name: XPC Sequence: fasta or formatted (903aa) NCBI GI: 224809302
Description:

xeroderma pigmentosum, complementation group C isoform 2

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [940aa] xeroderma pigmentosum, complementation group C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         72           3
 C cysteine            1.7         15           1
 D aspartate           5.5         50           2
 E glutamate           9.6         87           5
 F phenylalanine       2.7         24           1
 G glycine             6.9         62           3
 H histidine           2.5         23           2
 I isoleucine          2.7         24           2
 K lysine             10.2         92           3
 L leucine             8.2         74           2
 M methionine          1.2         11           2
 N asparagine          2.5         23           2
 P proline             5.4         49           2
 Q glutamine           3.3         30           1
 R arginine            7.9         71           2
 S serine              8.0         72           7
 T threonine           4.5         41           2
 V valine              5.1         46           2
 W tryptophan          1.4         13           2
 Y tyrosine            2.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   xeroderma pigmentosum, complementation group C isof... 
XPC                   0.989   xeroderma pigmentosum, complementation group C isof...
CTR9                  0.016   SH2 domain binding protein 1 
SFRS4                 0.015   splicing factor, arginine/serine-rich 4 
CHD9                  0.014   chromodomain helicase DNA binding protein 9 
BASP1                 0.014   brain abundant, membrane attached signal protein 1 [...
NOLC1                 0.014   nucleolar and coiled-body phosphoprotein 1 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
CRKRS                 0.014   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.014   Cdc2-related kinase, arginine/serine-rich isoform 1...
PAF1                  0.014   Paf1, RNA polymerase II associated factor, homolog [...
GPATCH8               0.013   G patch domain containing 8 
LOC100133923          0.013   PREDICTED: similar to UPF0634 protein C 
GTF2F1                0.013   general transcription factor IIF, polypeptide 1, 74...
MAP1B                 0.013   microtubule-associated protein 1B 
ANKRD36               0.012   PREDICTED: ankyrin repeat domain 36 
ANKRD36               0.012   PREDICTED: ankyrin repeat domain 36 
PPIG                  0.012   peptidylprolyl isomerase G 
HDGF2                 0.012   hepatoma-derived growth factor-related protein 2 iso...
SRRM1                 0.012   serine/arginine repetitive matrix 1 
HDGF2                 0.012   hepatoma-derived growth factor-related protein 2 iso...
PCDH15                0.012   protocadherin 15 isoform CD2-1 precursor 
SRRM2                 0.012   splicing coactivator subunit SRm300 
MLLT1                 0.011   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PDS5B                 0.011   PDS5, regulator of cohesion maintenance, homolog B [H...
TNRC18                0.011   trinucleotide repeat containing 18 
FLG                   0.011   filaggrin 
ZNF318                0.011   zinc finger protein 318 
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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