Guide to the Human Genome
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Name: TCHP Sequence: fasta or formatted (498aa) NCBI GI: 14150056
Description:

trichoplein

Referenced in:

Keratins

Other entries for this name:
alt mRNA [498aa] trichoplein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         44           1
 C cysteine            0.4          2           1
 D aspartate           2.0         10           1
 E glutamate          19.7         98           7
 F phenylalanine       0.6          3           1
 G glycine             1.0          5           1
 H histidine           1.8          9           1
 I isoleucine          2.0         10           1
 K lysine              8.0         40           2
 L leucine            11.8         59           2
 M methionine          3.4         17           1
 N asparagine          2.6         13           2
 P proline             1.2          6           1
 Q glutamine          12.0         60           3
 R arginine           12.7         63           2
 S serine              4.4         22           2
 T threonine           1.4          7           1
 V valine              1.8          9           2
 W tryptophan          2.2         11           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trichoplein 
TCHP                  1.000   trichoplein 
TCHH                  0.127   trichohyalin 
LOC283685             0.114   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.113   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.111   golgi autoantigen, golgin subfamily a-like 
CCDC11                0.110   coiled-coil domain containing 11 
PLEC1                 0.107   plectin 1 isoform 11 
PLEC1                 0.107   plectin 1 isoform 10 
PLEC1                 0.107   plectin 1 isoform 8 
PLEC1                 0.107   plectin 1 isoform 7 
PLEC1                 0.107   plectin 1 isoform 6 
PLEC1                 0.107   plectin 1 isoform 3 
PLEC1                 0.107   plectin 1 isoform 2 
PLEC1                 0.107   plectin 1 isoform 1 
LOC440243             0.104   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.104   golgi autoantigen, golgin subfamily a-like 
LOC100133758          0.087   PREDICTED: hypothetical protein, partial 
MYH10                 0.085   myosin, heavy polypeptide 10, non-muscle 
LOC645202             0.081   PREDICTED: hypothetical protein LOC645202 
LOC400352             0.079   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.079   PREDICTED: similar to Putative golgin subfamily A m...
MYH11                 0.076   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.076   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.076   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.076   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP250                0.075   centrosomal protein 2 
AZI1                  0.074   5-azacytidine induced 1 isoform a 
LOC100286959          0.073   PREDICTED: hypothetical protein XP_002343921 
IVL                   0.072   involucrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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