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Search of human proteins with 162417973
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|162417973 claudin 22 [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|162417973 claudin 22 [Homo sapiens] 457 e-129
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens] 399 e-112
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 398 e-111
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 398 e-111
gi|157820127 claudin-like [Homo sapiens] 230 6e-61
gi|153792186 claudin 7 [Homo sapiens] 127 1e-29
gi|153792768 claudin 6 [Homo sapiens] 125 4e-29
gi|11141861 claudin 9 [Homo sapiens] 120 1e-27
gi|10863887 claudin 1 [Homo sapiens] 120 1e-27
gi|40788011 claudin 8 [Homo sapiens] 120 1e-27
gi|4502877 claudin 4 [Homo sapiens] 117 8e-27
gi|183979973 claudin 19 isoform a [Homo sapiens] 114 5e-26
gi|183979975 claudin 19 isoform b [Homo sapiens] 114 5e-26
gi|195947374 claudin 5 [Homo sapiens] 113 1e-25
gi|195947372 claudin 5 [Homo sapiens] 113 1e-25
gi|4502875 claudin 3 [Homo sapiens] 112 2e-25
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 107 8e-24
gi|6912316 claudin 17 [Homo sapiens] 107 8e-24
gi|225703142 claudin 14 [Homo sapiens] 107 1e-23
gi|21536294 claudin 14 [Homo sapiens] 107 1e-23
gi|225703138 claudin 14 [Homo sapiens] 107 1e-23
gi|6912314 claudin 14 [Homo sapiens] 107 1e-23
gi|225703140 claudin 14 [Homo sapiens] 107 1e-23
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 105 3e-23
gi|9966781 claudin 2 [Homo sapiens] 99 4e-21
gi|5921465 claudin 10 isoform b [Homo sapiens] 99 4e-21
gi|7656981 claudin 15 [Homo sapiens] 91 6e-19
gi|47716519 claudin 20 [Homo sapiens] 80 2e-15
gi|33598916 claudin 10 isoform a [Homo sapiens] 73 2e-13
gi|10938016 claudin 11 [Homo sapiens] 66 3e-11
>gi|162417973 claudin 22 [Homo sapiens]
Length = 220
Score = 457 bits (1177), Expect = e-129
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELETRNTNLKH 220
CLLHCAACSSHAPLASGHYAVAQTQDHHQELETRNTNLKH
Sbjct: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELETRNTNLKH 220
>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 399 bits (1026), Expect = e-112
Identities = 192/212 (90%), Positives = 198/212 (93%)
Query: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MAL+FRT Q G+ LSLLGW+LS +T YLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASG+TALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELE 212
CLL+CAACSSHAPLA GHYAVAQ Q LE
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLE 212
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 398 bits (1022), Expect = e-111
Identities = 191/212 (90%), Positives = 197/212 (92%)
Query: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MAL+FRT Q G+ LS LGW+LS +T YLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASG+TALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELE 212
CLL+CAACSSHAPLA GHYAVAQ Q LE
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLE 212
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 398 bits (1022), Expect = e-111
Identities = 191/212 (90%), Positives = 197/212 (92%)
Query: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MAL+FRT Q G+ LS LGW+LS +T YLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LGGILSWASG+TALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 CLLHCAACSSHAPLASGHYAVAQTQDHHQELE 212
CLL+CAACSSHAPLA GHYAVAQ Q LE
Sbjct: 181 CLLNCAACSSHAPLALGHYAVAQMQTQCPYLE 212
>gi|157820127 claudin-like [Homo sapiens]
Length = 229
Score = 230 bits (587), Expect = 6e-61
Identities = 108/188 (57%), Positives = 136/188 (72%)
Query: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
MA FR QL G+ LSLLGWV SC+T LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
Query: 181 CLLHCAAC 188
LL +AC
Sbjct: 181 LLLIFSAC 188
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 127 bits (318), Expect = 1e-29
Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNL---DLNEMENWTMGLWQTCVIQEEVGMQCKD 66
QL G S++LLGWV +P W+ + ++ + GLW CV Q M CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKM 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL A L+ +R LM +S LGFL + V+ G+ C R G + K R+ + GGI+
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ ALV SW H+ V +F++ +P + ++EFG A+F+GW ++LGG LL C+
Sbjct: 127 IVAGLAALVACSWYGHQIVTDFYNPLIPTNI-KYEFGPAIFIGWAGSALVILGGALLSCS 185
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 125 bits (313), Expect = 4e-29
Identities = 77/193 (39%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTM---GLWQTCVIQEEVGMQCKD 66
Q+ GV L+LLGWV ++ LP WK N + + GLW +CV+Q MQCK
Sbjct: 7 QILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKV 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LALP +L+ +R L ++ + GLLV G C E ++D K RL++ GI+
Sbjct: 67 YDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVE-EKDSKARLVLTSGIVF 125
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
SGV L+PV W AH +++F++ V + R E G +L+LGW A LLLGG LL C
Sbjct: 126 VISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKR-ELGASLYLGWAASGLLLLGGGLL-CC 183
Query: 187 ACSSHAPLASGHY 199
C S HY
Sbjct: 184 TCPSGGSQGPSHY 196
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 120 bits (300), Expect = 1e-27
Identities = 68/182 (37%), Positives = 106/182 (58%), Gaps = 5/182 (2%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTM---GLWQTCVIQEEVGMQ 63
T +L G++L++LGW+ + ++ LP WK N + + GLW +CV+Q MQ
Sbjct: 4 TGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
CK +DS LALP +L+ +R L ++ L LGLLV+ G C E + K R+++ G
Sbjct: 64 CKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDE-GAKARIVLTAG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
++ +G+ L+PV W AH +Q+F++ V + + R E G +L+LGW A L+LGG LL
Sbjct: 123 VILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKR-ELGASLYLGWAAAALLMLGGGLL 181
Query: 184 HC 185
C
Sbjct: 182 CC 183
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 120 bits (300), Expect = 1e-27
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 4/180 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNL---DLNEMENWTMGLWQTCVIQEEVGMQCKD 66
QL G L+ LGW+ + ++ LP W+ + ++ + GLW +CV Q +QCK
Sbjct: 7 QLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKV 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
FDS L L + L+ +R LM + LG + + V+ G+ C++ E K R+ ++GG +
Sbjct: 67 FDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ LV +W ++ VQEF+D P R+EFG+ALF GW A LLGG LL C+
Sbjct: 127 LLAGLAILVATAWYGNRIVQEFYDPMTP-VNARYEFGQALFTGWAAASLCLLGGALLCCS 185
>gi|40788011 claudin 8 [Homo sapiens]
Length = 225
Score = 120 bits (300), Expect = 1e-27
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 4/182 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEM---ENWTMGLWQTCVIQEEVGMQCKD 66
++AG+ L +G V + +P W+ N + EN+ GLW CV Q + MQCK
Sbjct: 7 EIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKI 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL +L+ +R LM ++ + FL +++ G+ C R +K +L+ GI+
Sbjct: 67 YDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ L+PVSWVA+ +++F++ ++ + + E GEAL+LGW L L++GG L C
Sbjct: 127 IITGMVVLIPVSWVANAIIRDFYN-SIVNVAQKRELGEALYLGWTTALVLIVGGALFCCV 185
Query: 187 AC 188
C
Sbjct: 186 FC 187
>gi|4502877 claudin 4 [Homo sapiens]
Length = 209
Score = 117 bits (293), Expect = 8e-27
Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 5/179 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCKD 66
Q+ G++L++LGW+ L LP W+ + N + + T+ GLW CV+Q MQCK
Sbjct: 7 QVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKV 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LALP +L+ +R L+ +S + LG+L+S G C E + K + +I+ G++
Sbjct: 67 YDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDE-SAKAKTMIVAGVVF 125
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHC 185
+G+ +VPVSW AH +Q+F++ V R E G +L++GW A LLLGG LL C
Sbjct: 126 LLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKR-EMGASLYVGWAASGLLLLGGGLLCC 183
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 114 bits (286), Expect = 5e-26
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 4/190 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWT---MGLWQTCVIQEEVGMQCKD 66
QL G L+L GWV + LP WK + + + GLW +C Q +QCK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL ++ +R LM ++ LGF+ +++S G+ C R+G+S K R+ I GG L
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ L VSW A QEF++ + P R+EFG ALF+GW + +LGG L C
Sbjct: 127 ILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFLCCT 185
Query: 187 ACSSHAPLAS 196
P +S
Sbjct: 186 CPEPERPNSS 195
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 114 bits (286), Expect = 5e-26
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 4/190 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWT---MGLWQTCVIQEEVGMQCKD 66
QL G L+L GWV + LP WK + + + GLW +C Q +QCK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL ++ +R LM ++ LGF+ +++S G+ C R+G+S K R+ I GG L
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ L VSW A QEF++ + P R+EFG ALF+GW + +LGG L C
Sbjct: 127 ILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFLCCT 185
Query: 187 ACSSHAPLAS 196
P +S
Sbjct: 186 CPEPERPNSS 195
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 113 bits (282), Expect = 1e-25
Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCKD 66
++ G+ L L+GW L LP W+ LD N + T GLW +CV+Q MQCK
Sbjct: 92 EILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 151
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL E++ +R L + L F+ L V+ G C + K R+ + GG+L
Sbjct: 152 YDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGGVLY 210
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
G+ ALVP+ W A+ V+EF+D +VP ++E G AL++GW A L++GGCLL C
Sbjct: 211 LFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLLCCG 269
Query: 187 A 187
A
Sbjct: 270 A 270
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 113 bits (282), Expect = 1e-25
Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCKD 66
++ G+ L L+GW L LP W+ LD N + T GLW +CV+Q MQCK
Sbjct: 92 EILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 151
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LAL E++ +R L + L F+ L V+ G C + K R+ + GG+L
Sbjct: 152 YDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGGVLY 210
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
G+ ALVP+ W A+ V+EF+D +VP ++E G AL++GW A L++GGCLL C
Sbjct: 211 LFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLLCCG 269
Query: 187 A 187
A
Sbjct: 270 A 270
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 112 bits (281), Expect = 2e-25
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCKD 66
++ G +L++LGW+ + + LP W+ + ++ +N GLW CV+Q MQCK
Sbjct: 6 EITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQMQCKV 65
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+DS LALP +L+ +R L+ ++ L GLLV+ G C + K ++ I+ G+L
Sbjct: 66 YDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDD-TAKAKITIVAGVLF 124
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+ + LVPVSW A+ +++F++ VP+ R E G L++GW A LLGG LL C+
Sbjct: 125 LLAALLTLVPVSWSANTIIRDFYNPVVPEAQKR-EMGAGLYVGWAAAALQLLGGALLCCS 183
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 107 bits (267), Expect = 8e-24
Identities = 71/214 (33%), Positives = 102/214 (47%), Gaps = 13/214 (6%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
T Q+ LS+LG + W +L N + + GLW++CV Q +C
Sbjct: 4 TTCQVVAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVRQSSGFTEC 63
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
+ + + L LPA L+ R LM + LG +GLLVS F L C+RIG + K + + GI
Sbjct: 64 RPYFTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGI 123
Query: 125 LSWASGVTALVPVSWVAHKTVQEFWDEN----------VPDFVPRWEFGEALFLGWFAGL 174
+ SG+ A+ VS A+ V FW V R+ FG ALF+GW AG
Sbjct: 124 MFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGG 183
Query: 175 SLLLGGCLLHCAACSSHAPLASGHYAVAQTQDHH 208
L+GG ++ C AC AP + + AV+ H
Sbjct: 184 LTLIGGVMM-CIACRGLAPEETNYKAVSYHASGH 216
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 107 bits (267), Expect = 8e-24
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 6/212 (2%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCKD 66
Q+AG+ L LG V + T LP W+ + ++ E GLW C+ Q V +QCK
Sbjct: 7 QIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCKF 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+ S LALP L +R LM ++ L + LL+ G+ ++ S K LL G+L
Sbjct: 67 YSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVLF 126
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
+G+ L+PVSW A+ +++F++ + + E G ALFLGW + L +GG LL C
Sbjct: 127 ILTGIFVLIPVSWTANIIIRDFYNPAI-HIGQKRELGAALFLGWASAAVLFIGGGLL-CG 184
Query: 187 ACSSHAPLASGHYAVAQTQDHHQELETRNTNL 218
C + Y V + H + + RNT +
Sbjct: 185 FCCCNRKKQGYRYPVPGYRVPHTD-KRRNTTM 215
>gi|225703142 claudin 14 [Homo sapiens]
Length = 239
Score = 107 bits (266), Expect = 1e-23
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
T QL G LS LG V + +T LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 HCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|21536294 claudin 14 [Homo sapiens]
Length = 239
Score = 107 bits (266), Expect = 1e-23
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
T QL G LS LG V + +T LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 HCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|225703138 claudin 14 [Homo sapiens]
Length = 239
Score = 107 bits (266), Expect = 1e-23
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
T QL G LS LG V + +T LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 HCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|6912314 claudin 14 [Homo sapiens]
Length = 239
Score = 107 bits (266), Expect = 1e-23
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
T QL G LS LG V + +T LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 HCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|225703140 claudin 14 [Homo sapiens]
Length = 239
Score = 107 bits (266), Expect = 1e-23
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK---NLNLDLNEMENWTMGLWQTCVIQEEVGMQ 63
T QL G LS LG V + +T LPHW+ ++ ++ ++ GLW CV Q
Sbjct: 4 TAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQ 63
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + S LALP +L+ +R LM +S L + + G+ C R + K ILGG
Sbjct: 64 CQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKG-TPAKTTFAILGG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLL 183
L +G+ +V VSW + VQ F++ +P + ++E G+AL+LG+ + L+GG LL
Sbjct: 123 TLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLL 181
Query: 184 HCAACSSHAP 193
C +C AP
Sbjct: 182 -CLSCQDEAP 190
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 105 bits (262), Expect = 3e-23
Identities = 71/215 (33%), Positives = 103/215 (47%), Gaps = 15/215 (6%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEME---NWTMGLWQTCVIQEEVGMQ 63
T Q G +SL+G + W +L N + N+ GLW++CV + +
Sbjct: 4 TACQGLGFVVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNY-QGLWRSCVRESSGFTE 62
Query: 64 CKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGG 123
C+ + + L LPA L+ R LM + LG +GLLVS F L C+RIG + K + + G
Sbjct: 63 CRGYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSG 122
Query: 124 ILSWASGVTALVPVSWVAHKTVQEFWDEN----------VPDFVPRWEFGEALFLGWFAG 173
I+ SG+ A+ VS A+ V FW V R+ FG ALF+GW AG
Sbjct: 123 IMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAG 182
Query: 174 LSLLLGGCLLHCAACSSHAPLASGHYAVAQTQDHH 208
L+GG ++ C AC AP + + AV+ H
Sbjct: 183 GLTLIGGVMM-CIACRGLAPEETNYKAVSYHASGH 216
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 98.6 bits (244), Expect = 4e-21
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 10 QLAGVSLSLLGWVLSCLTNYLPHWKN---LNLDLNEMENWTMGLWQTCVIQEEVGMQCKD 66
QL G L LLG + + + LP WK + + ++ GLW C QC
Sbjct: 7 QLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDI 66
Query: 67 FDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILS 126
+ + L LPA+++ ++ +M S+ + L ++S G+ C + R K R+ + GG+
Sbjct: 67 YSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESR-AKDRVAVAGGVFF 125
Query: 127 WASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCA 186
G+ +PV+W H +++F+ VPD + ++E GEAL+LG + L L+ G +L C
Sbjct: 126 ILGGLLGFIPVAWNLHGILRDFYSPLVPDSM-KFEIGEALYLGIISSLFSLIAGIIL-CF 183
Query: 187 ACSSHAPLASGHYAVAQTQ 205
+CSS S +Y Q Q
Sbjct: 184 SCSSQRN-RSNYYDAYQAQ 201
>gi|5921465 claudin 10 isoform b [Homo sapiens]
Length = 228
Score = 98.6 bits (244), Expect = 4e-21
Identities = 64/188 (34%), Positives = 98/188 (52%), Gaps = 8/188 (4%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQC 64
T +++ +S+ GWVL T +WK +D + T LW+ CV C
Sbjct: 4 TASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNC 63
Query: 65 KDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGI 124
KDF S LAL ++ R LM + LGF G + + FG+ C ++G S + K ++ L GI
Sbjct: 64 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKIACLAGI 122
Query: 125 LSWASGVTALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALFLGWFAGLSLLLGGCLL 183
+ SG+ ++ S A+K EF+D P FV ++E G ALF+GW AG SL + G ++
Sbjct: 123 VFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALFIGW-AGASLCIIGGVI 178
Query: 184 HCAACSSH 191
C + S +
Sbjct: 179 FCFSISDN 186
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 91.3 bits (225), Expect = 6e-19
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 8/189 (4%)
Query: 13 GVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTM--GLWQTCVIQEEVGMQCKDFDSF 70
G ++ +G ++ +T +W+ + N + T+ LW +C C +F S
Sbjct: 9 GFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWEFPSM 68
Query: 71 LALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILSWASG 130
LAL ++ R LM + LGFLGLL+ GL C IG + K +L G L +G
Sbjct: 69 LALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAG 128
Query: 131 VTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLHCAAC-- 188
+ +V +SW A ++F+D P ++E G AL+LGW A L +LGG L C+AC
Sbjct: 129 ICGMVAISWYAFNITRDFFDPLYPG--TKYELGPALYLGWSASLISILGGLCL-CSACCC 185
Query: 189 -SSHAPLAS 196
S P AS
Sbjct: 186 GSDEDPAAS 194
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 79.7 bits (195), Expect = 2e-15
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Query: 11 LAGVSLSLLGWVLSC-------LTNYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEV 60
+A L LL ++L+ LP+WK N+++D N + GLW C
Sbjct: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
Query: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
C S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K
Sbjct: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASF 119
Query: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
GG+ ++G+++L+ W + + F D VP+ + E G A+++G+ + + L + G
Sbjct: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG 178
Query: 181 CLLHCAACSSHAPLA 195
++ C +C P A
Sbjct: 179 -MIFCTSCIKRNPEA 192
>gi|33598916 claudin 10 isoform a [Homo sapiens]
Length = 226
Score = 72.8 bits (177), Expect = 2e-13
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 49 GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108
GLW C C+ + + ++ R LM + LGF G + + FG+ C ++G
Sbjct: 46 GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
Query: 109 ESQRDLKRRLLILGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167
S + K ++ L GI+ SG+ ++ S A+K EF+D P FV ++E G ALF
Sbjct: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
Query: 168 LGWFAGLSLLLGGCLLHCAACSSH 191
+GW AG SL + G ++ C + S +
Sbjct: 162 IGW-AGASLCIIGGVIFCFSISDN 184
>gi|10938016 claudin 11 [Homo sapiens]
Length = 207
Score = 65.9 bits (159), Expect = 3e-11
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 7 TVAQLAGVSLSLLGWVLSCLTNYLPHWK-----NLNLDLNEMENWTMGLWQTCVIQEEVG 61
T Q+ G S +GW+ +T W + E + GLW CV+ +
Sbjct: 4 TCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGL- 62
Query: 62 MQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLIL 121
CK L LP ++ R LM ++ LG +L+ L C+R+G+ K R L
Sbjct: 63 YHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQL 122
Query: 122 GGILSWASGVTALVPVSW---VAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLL 178
G+L + ALV W AH+ FG +L+ GW + L+
Sbjct: 123 AGVLLILLALCALVATIWFPVCAHRETTIV------------SFGYSLYAGWIGAVLCLV 170
Query: 179 GGCLLHCAACSSHA 192
GGC++ C A + A
Sbjct: 171 GGCVILCCAGDAQA 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,420,934
Number of Sequences: 37866
Number of extensions: 357022
Number of successful extensions: 1177
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 49
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.