Search of human proteins with 157951702

Search of human proteins with 157951702

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157951702 Fanconi anemia core complex 100 kDa subunit
isoform b [Homo sapiens]
         (881 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform...  1780   0.0  
gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform...  1470   0.0  
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]            40   0.012
gi|157785645 SPEG complex locus [Homo sapiens]                         35   0.31 
gi|54873613 agrin [Homo sapiens]                                       35   0.40 
gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]                      35   0.40 
gi|33286446 opioid growth factor receptor [Homo sapiens]               34   0.68 
gi|148276998 zinc finger protein 628 [Homo sapiens]                    33   0.89 
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       33   1.2  
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]       33   1.2  
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]        33   1.2  
gi|5032193 TNF receptor-associated factor 1 [Homo sapiens]             32   2.0  
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi...    32   2.0  
gi|24497460 Shaw-related voltage-gated potassium channel protein...    32   2.6  
gi|238859651 pleckstrin homology domain containing family A memb...    32   3.4  
gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]            32   3.4  
gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo ...    32   3.4  
gi|21396500 HIRA interacting protein 3 [Homo sapiens]                  32   3.4  
gi|110349719 titin isoform N2-A [Homo sapiens]                         31   4.4  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      31   4.4  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      31   4.4  
gi|110349715 titin isoform N2-B [Homo sapiens]                         31   4.4  
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    31   4.4  
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    31   4.4  
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    31   4.4  
gi|221136876 Ras association (RalGDS/AF-6) domain family (N-term...    31   4.4  
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur...    31   5.8  
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso...    31   5.8  
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi...    31   5.8  
gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo ...    31   5.8  

>gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform b
           [Homo sapiens]
          Length = 881

 Score = 1780 bits (4610), Expect = 0.0
 Identities = 881/881 (100%), Positives = 881/881 (100%)

Query: 1   MAGAAPRVRYLAGFCCPLGGLAAGKPRVLCHEAEVFLSTGSELVYVYDQEGGLLTAAFRF 60
           MAGAAPRVRYLAGFCCPLGGLAAGKPRVLCHEAEVFLSTGSELVYVYDQEGGLLTAAFRF
Sbjct: 1   MAGAAPRVRYLAGFCCPLGGLAAGKPRVLCHEAEVFLSTGSELVYVYDQEGGLLTAAFRF 60

Query: 61  PDQVWHLELLAPRRLLYALCARRGLYCLSLDHPGRSRSTSQDDRDSEDGDQPSPVIPVDP 120
           PDQVWHLELLAPRRLLYALCARRGLYCLSLDHPGRSRSTSQDDRDSEDGDQPSPVIPVDP
Sbjct: 61  PDQVWHLELLAPRRLLYALCARRGLYCLSLDHPGRSRSTSQDDRDSEDGDQPSPVIPVDP 120

Query: 121 DACILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTP 180
           DACILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTP
Sbjct: 121 DACILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTP 180

Query: 181 PAGVPGKPAAPHFLPVLCSVSPSGSRVPHDLLGGSGGFTLEDALFGLLFGADATLLQSPV 240
           PAGVPGKPAAPHFLPVLCSVSPSGSRVPHDLLGGSGGFTLEDALFGLLFGADATLLQSPV
Sbjct: 181 PAGVPGKPAAPHFLPVLCSVSPSGSRVPHDLLGGSGGFTLEDALFGLLFGADATLLQSPV 240

Query: 241 VLCGLPDGQLCCVILKALVTSRSAPGDPNALVKILHHLEEPVIFIGALKTEPQAAEAAEN 300
           VLCGLPDGQLCCVILKALVTSRSAPGDPNALVKILHHLEEPVIFIGALKTEPQAAEAAEN
Sbjct: 241 VLCGLPDGQLCCVILKALVTSRSAPGDPNALVKILHHLEEPVIFIGALKTEPQAAEAAEN 300

Query: 301 FLPDEDVHCDCLVAFGHHGRMLAIKASWDESGKLVPELREYCLPGPVLCAACGGGGRVYH 360
           FLPDEDVHCDCLVAFGHHGRMLAIKASWDESGKLVPELREYCLPGPVLCAACGGGGRVYH
Sbjct: 301 FLPDEDVHCDCLVAFGHHGRMLAIKASWDESGKLVPELREYCLPGPVLCAACGGGGRVYH 360

Query: 361 STPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRTHEGGTKL 420
           STPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRTHEGGTKL
Sbjct: 361 STPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRTHEGGTKL 420

Query: 421 LALSAKGRLMTCSLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRN 480
           LALSAKGRLMTCSLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRN
Sbjct: 421 LALSAKGRLMTCSLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRN 480

Query: 481 KALTSLNEAMNVSCALLSSGTGPRPISCTTSTTWSRLQTQDVLMATCVLENSSSFSLDQG 540
           KALTSLNEAMNVSCALLSSGTGPRPISCTTSTTWSRLQTQDVLMATCVLENSSSFSLDQG
Sbjct: 481 KALTSLNEAMNVSCALLSSGTGPRPISCTTSTTWSRLQTQDVLMATCVLENSSSFSLDQG 540

Query: 541 WTLCIQVLTSSCALDLDSACSAITYTIPVDQLGPGARREVTLPLGPGENGGLDLPVTVSC 600
           WTLCIQVLTSSCALDLDSACSAITYTIPVDQLGPGARREVTLPLGPGENGGLDLPVTVSC
Sbjct: 541 WTLCIQVLTSSCALDLDSACSAITYTIPVDQLGPGARREVTLPLGPGENGGLDLPVTVSC 600

Query: 601 TLFYSLREVVGGALAPSDSEDPFLDECPSDVLPEQEGVCLPLSRHTVDMLQCLRFPGLAL 660
           TLFYSLREVVGGALAPSDSEDPFLDECPSDVLPEQEGVCLPLSRHTVDMLQCLRFPGLAL
Sbjct: 601 TLFYSLREVVGGALAPSDSEDPFLDECPSDVLPEQEGVCLPLSRHTVDMLQCLRFPGLAL 660

Query: 661 PHTRAPSPLGPTRDPVATFLETCREPGSQPAGPASLRAEYLPPSVASIKVSAELLRAALK 720
           PHTRAPSPLGPTRDPVATFLETCREPGSQPAGPASLRAEYLPPSVASIKVSAELLRAALK
Sbjct: 661 PHTRAPSPLGPTRDPVATFLETCREPGSQPAGPASLRAEYLPPSVASIKVSAELLRAALK 720

Query: 721 DGHSGVPLCCATLQWLLAENAAVDVVRARALSSIQGVAPDGANVHLIVREVAMTDLCPAG 780
           DGHSGVPLCCATLQWLLAENAAVDVVRARALSSIQGVAPDGANVHLIVREVAMTDLCPAG
Sbjct: 721 DGHSGVPLCCATLQWLLAENAAVDVVRARALSSIQGVAPDGANVHLIVREVAMTDLCPAG 780

Query: 781 PIQAVEIQVESSSLADICRAHHAVVGRMQTMVTEQAAQGSSAPDLRVQYLRQIHANHETL 840
           PIQAVEIQVESSSLADICRAHHAVVGRMQTMVTEQAAQGSSAPDLRVQYLRQIHANHETL
Sbjct: 781 PIQAVEIQVESSSLADICRAHHAVVGRMQTMVTEQAAQGSSAPDLRVQYLRQIHANHETL 840

Query: 841 LREVQTLRDRLCTEDEASSCATAQRLLQVYRQLRHPSLILL 881
           LREVQTLRDRLCTEDEASSCATAQRLLQVYRQLRHPSLILL
Sbjct: 841 LREVQTLRDRLCTEDEASSCATAQRLLQVYRQLRHPSLILL 881


>gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform a
           [Homo sapiens]
          Length = 730

 Score = 1470 bits (3805), Expect = 0.0
 Identities = 730/730 (100%), Positives = 730/730 (100%)

Query: 152 MQLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGSRVPHDL 211
           MQLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGSRVPHDL
Sbjct: 1   MQLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGSRVPHDL 60

Query: 212 LGGSGGFTLEDALFGLLFGADATLLQSPVVLCGLPDGQLCCVILKALVTSRSAPGDPNAL 271
           LGGSGGFTLEDALFGLLFGADATLLQSPVVLCGLPDGQLCCVILKALVTSRSAPGDPNAL
Sbjct: 61  LGGSGGFTLEDALFGLLFGADATLLQSPVVLCGLPDGQLCCVILKALVTSRSAPGDPNAL 120

Query: 272 VKILHHLEEPVIFIGALKTEPQAAEAAENFLPDEDVHCDCLVAFGHHGRMLAIKASWDES 331
           VKILHHLEEPVIFIGALKTEPQAAEAAENFLPDEDVHCDCLVAFGHHGRMLAIKASWDES
Sbjct: 121 VKILHHLEEPVIFIGALKTEPQAAEAAENFLPDEDVHCDCLVAFGHHGRMLAIKASWDES 180

Query: 332 GKLVPELREYCLPGPVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLP 391
           GKLVPELREYCLPGPVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLP
Sbjct: 181 GKLVPELREYCLPGPVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLP 240

Query: 392 PMLCPASLNICSVVSLSASPRTHEGGTKLLALSAKGRLMTCSLDLDSEMPGPARMTTESA 451
           PMLCPASLNICSVVSLSASPRTHEGGTKLLALSAKGRLMTCSLDLDSEMPGPARMTTESA
Sbjct: 241 PMLCPASLNICSVVSLSASPRTHEGGTKLLALSAKGRLMTCSLDLDSEMPGPARMTTESA 300

Query: 452 GQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLNEAMNVSCALLSSGTGPRPISCTTS 511
           GQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLNEAMNVSCALLSSGTGPRPISCTTS
Sbjct: 301 GQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLNEAMNVSCALLSSGTGPRPISCTTS 360

Query: 512 TTWSRLQTQDVLMATCVLENSSSFSLDQGWTLCIQVLTSSCALDLDSACSAITYTIPVDQ 571
           TTWSRLQTQDVLMATCVLENSSSFSLDQGWTLCIQVLTSSCALDLDSACSAITYTIPVDQ
Sbjct: 361 TTWSRLQTQDVLMATCVLENSSSFSLDQGWTLCIQVLTSSCALDLDSACSAITYTIPVDQ 420

Query: 572 LGPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSEDPFLDECPSDV 631
           LGPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSEDPFLDECPSDV
Sbjct: 421 LGPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSEDPFLDECPSDV 480

Query: 632 LPEQEGVCLPLSRHTVDMLQCLRFPGLALPHTRAPSPLGPTRDPVATFLETCREPGSQPA 691
           LPEQEGVCLPLSRHTVDMLQCLRFPGLALPHTRAPSPLGPTRDPVATFLETCREPGSQPA
Sbjct: 481 LPEQEGVCLPLSRHTVDMLQCLRFPGLALPHTRAPSPLGPTRDPVATFLETCREPGSQPA 540

Query: 692 GPASLRAEYLPPSVASIKVSAELLRAALKDGHSGVPLCCATLQWLLAENAAVDVVRARAL 751
           GPASLRAEYLPPSVASIKVSAELLRAALKDGHSGVPLCCATLQWLLAENAAVDVVRARAL
Sbjct: 541 GPASLRAEYLPPSVASIKVSAELLRAALKDGHSGVPLCCATLQWLLAENAAVDVVRARAL 600

Query: 752 SSIQGVAPDGANVHLIVREVAMTDLCPAGPIQAVEIQVESSSLADICRAHHAVVGRMQTM 811
           SSIQGVAPDGANVHLIVREVAMTDLCPAGPIQAVEIQVESSSLADICRAHHAVVGRMQTM
Sbjct: 601 SSIQGVAPDGANVHLIVREVAMTDLCPAGPIQAVEIQVESSSLADICRAHHAVVGRMQTM 660

Query: 812 VTEQAAQGSSAPDLRVQYLRQIHANHETLLREVQTLRDRLCTEDEASSCATAQRLLQVYR 871
           VTEQAAQGSSAPDLRVQYLRQIHANHETLLREVQTLRDRLCTEDEASSCATAQRLLQVYR
Sbjct: 661 VTEQAAQGSSAPDLRVQYLRQIHANHETLLREVQTLRDRLCTEDEASSCATAQRLLQVYR 720

Query: 872 QLRHPSLILL 881
           QLRHPSLILL
Sbjct: 721 QLRHPSLILL 730


>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 332

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 573 GPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSED--PFLDECPSD 630
           GP +     L LGPG    LDL +    T   +LRE +GG  A +D+ D  P LD+  S 
Sbjct: 264 GPNSGVGRGLGLGPGSRAHLDLLIRGDSTED-NLREALGGKHAEADATDDPPILDQGQSL 322

Query: 631 VLPEQEG 637
           VLP++EG
Sbjct: 323 VLPKREG 329


>gi|157785645 SPEG complex locus [Homo sapiens]
          Length = 3267

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 37/148 (25%)

Query: 560  CSAITYTIPVDQLGPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDS 619
            C  +   IP     P  R  VT+P  P  +GGL                      + SDS
Sbjct: 1886 CHLVLRPIPELLRAPPERVWVTMPRRPPPSGGLS---------------------SSSDS 1924

Query: 620  EDPFLDECPS---DVLPEQEGVCLPLSRHTVDMLQCLRFPGLALPHTRAPSPL------- 669
            E+  L+E PS    + PE  G  + L+    +         L  P T A +P+       
Sbjct: 1925 EEEELEELPSVPRPLQPEFSGSRVSLTDIPTE------DEALGTPETGAATPMDWQEQGR 1978

Query: 670  GPTRDPVATFLETCREPGSQPAGPASLR 697
             P++D  A   E    PG +PA  AS R
Sbjct: 1979 APSQDQEAPSPEALPSPGQEPAAGASPR 2006


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 105 DSEDGDQPSPVIPVDPDACILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDP 164
           + + G   +PV P  PDAC      LC F    +V     +GP R      + PCP    
Sbjct: 154 EDKPGTHFTPVPPTPPDAC---RGMLCGF---GAVCEPNAEGPGRASCVCKKSPCPSVVA 207

Query: 165 RPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGSRVPHDLLGGSGGFTLEDAL 224
              G     + S+Y+    +     +      L S  P GSR P   +  S G T   + 
Sbjct: 208 PVCGS----DASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSA 263

Query: 225 FGLLFGADATLLQSPVVLCGLPDGQLC 251
            GL     A+ L  P    G P+G +C
Sbjct: 264 DGL----TASCL-CPATCRGAPEGTVC 285


>gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]
          Length = 5795

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 108  DGDQPSPVIPVDPDACILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPG 167
            +G  P+P  P+ P +C  PDA +      +   +T     + +KM  F  P      R  
Sbjct: 5149 EGIAPTPEDPLQP-SCRKPDAEVLTVESPEEEAMTKYSQESWFKMPKFRMPSLRRSFRDR 5207

Query: 168  GQIGEVELSSYTPPAGVPGKPAA 190
            G  G++E++    PA   G+ AA
Sbjct: 5208 GGAGKLEVAQTQAPAATGGEAAA 5230


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 33.9 bits (76), Expect = 0.68
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 656 PGLALPHTRAPSPLGPTRD-PVATFLETCREPGSQPAGPA 694
           P  +   T  PSP GPTRD P  +  ET   PG +PAGPA
Sbjct: 574 PAESPSETPGPSPAGPTRDEPAESPSET---PGPRPAGPA 610


>gi|148276998 zinc finger protein 628 [Homo sapiens]
          Length = 1055

 Score = 33.5 bits (75), Expect = 0.89
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 112 PSPVIPVDPDACILPDAALCAFTLLDSVLVTL---VQGPARWKMQLFEQPCPGEDPRPGG 168
           P+P  P  P   ++P+  L A      ++       QG +  ++ L  QPCPG D  P  
Sbjct: 262 PAPPAPPPPPPPVVPELFLAAAETTVELVYRCDGCEQGFSSEELLLEHQPCPGPDAAPQP 321

Query: 169 QIGEVEL-SSYTPPAGVPGKP-----AAPHFLPVLCSVS 201
           Q    E   +  PP+ +P  P      AP F  + C  S
Sbjct: 322 QEAPAEAPKADQPPSPLPQPPPPAAAPAPGFACLPCGKS 360


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 93  PGRSRSTSQDDRDSEDGDQPSPVIPVDPDACILPDAALCAFTLLDSVLVTLVQGPARWKM 152
           PG+     Q     + G+ P  ++P+     + P   +   T         +QGP     
Sbjct: 160 PGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP----- 214

Query: 153 QLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKP 188
                P P   P P G +G   L     P G+PG P
Sbjct: 215 -----PGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 245


>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
          Length = 686

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 93  PGRSRSTSQDDRDSEDGDQPSPVIPVDPDACILPDAALCAFTLLDSVLVTLVQGPARWKM 152
           PG+     Q     + G+ P  ++P+     + P   +   T         +QGP     
Sbjct: 198 PGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP----- 252

Query: 153 QLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKP 188
                P P   P P G +G   L     P G+PG P
Sbjct: 253 -----PGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 283


>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
          Length = 698

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 93  PGRSRSTSQDDRDSEDGDQPSPVIPVDPDACILPDAALCAFTLLDSVLVTLVQGPARWKM 152
           PG+     Q     + G+ P  ++P+     + P   +   T         +QGP     
Sbjct: 198 PGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP----- 252

Query: 153 QLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVPGKP 188
                P P   P P G +G   L     P G+PG P
Sbjct: 253 -----PGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 283


>gi|5032193 TNF receptor-associated factor 1 [Homo sapiens]
          Length = 416

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 372 SRGSTPLGPEQPEEGPGGLPPMLCPASLN---ICSVVSLSASPRTHEGGTKLLALSAKGR 428
           S GS+P       E P G PP +C        +C    LS +PR    G   +    +G 
Sbjct: 4   SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPR---NGEDQICPKCRGE 60

Query: 429 LMTCSLDLDSEMPGPARMTTESAGQKIKELLSGIG 463
                 DL S  PG    T E A  ++ E  +GIG
Sbjct: 61  ------DLQSISPGSRLRTQEKAHPEVAE--AGIG 87


>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
           sapiens]
          Length = 1478

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 688 SQPAGPASLR--AEYLPPSVASIKVSAELLRAALKDGHSGVPLC---CATLQWLLAENAA 742
           S  A  AS+R   + +  S+ +++ + E ++A + +  + +      C  L+  + +   
Sbjct: 662 SLEAEQASIRHLGDQMEASLLAVRKAKEAMKAQMAEKEAILQSKEGECQQLREEVEQCQQ 721

Query: 743 VDVVRARALSSIQGVAPDGAN-VHLIVREVAMTDLCPAGPIQAVEIQVESSSLADICRAH 801
           +   R R L +++         + ++  E     + P    +A E+  + +        H
Sbjct: 722 LAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGPPTDNEARELAAQLALSQAQLEVH 781

Query: 802 HAVVGRMQTMVTEQAAQGSSAPDLRVQYLRQIHANHETLLREVQTLRDRLCTEDEASSCA 861
              V R+Q  V +  A+  +A D + +   Q+ +  E +LRE +TL  +L  ++EA + A
Sbjct: 782 QGEVQRLQAQVVDLQAKMRAALDDQDKVQSQL-SMAEAVLREHKTLVQQLKEQNEALNRA 840

Query: 862 TAQRLLQ 868
             Q LLQ
Sbjct: 841 HVQELLQ 847


>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
           [Homo sapiens]
          Length = 757

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 377 PLGPEQPEEGPGGL--PPMLCPASLNICSVVSLSASPRTHEG 416
           P  P  P  G GG+  PP + P S+ +    +  A P TH G
Sbjct: 581 PPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPG 622


>gi|238859651 pleckstrin homology domain containing family A member
           4 isoform 1 [Homo sapiens]
          Length = 779

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 371 LSRGSTPL-GPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRT--HEGGTKLLALSAKG 427
           LSR  TP  GP  P E  GG PP          S    S  PRT  H G    L L  + 
Sbjct: 291 LSRPPTPRRGP--PSEAGGGKPPR---------SPQHWSQEPRTQAHSGSPTYLQLPPRP 339

Query: 428 RLMTCSLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLN 487
                S+ L   +PGP   +T     +   LL+ +      +  L++ +DQ+ +    L 
Sbjct: 340 PGTRASMVL---LPGPPLESTFHQSLETDTLLTKLCGQDRLLRRLQEEIDQKQEEKEQLE 396

Query: 488 EAMNVSCALLSSGT 501
            A+ ++   L   T
Sbjct: 397 AALELTRQQLGQAT 410


>gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 126 PDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVP 185
           PD   C    +D    T  QG          +PC     R  G    + + S  PPA +P
Sbjct: 25  PDCPSCHLYFIDEE--TEAQG--------LREPCSEAHSRAAGLKSSLPVLSCPPPATIP 74

Query: 186 GKPAAPHFLPVLCSVSPSG 204
            +P  P  L  LC  SP G
Sbjct: 75  PRP-EPTLLTGLCPSSPHG 92


>gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo
           sapiens]
          Length = 228

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 126 PDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTPPAGVP 185
           PD   C    +D    T  QG          +PC     R  G    + + S  PPA +P
Sbjct: 25  PDCPSCHLYFIDEE--TEAQG--------LREPCSEAHSRAAGLRSSLPVLSCPPPATIP 74

Query: 186 GKPAAPHFLPVLCSVSPSG 204
            +P  P  L  LC  SP G
Sbjct: 75  PRP-EPTLLTGLCPSSPHG 92


>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
          Length = 556

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 397 ASLNICSVVSLSASPRTHEGGTKLLALSAKGRLMTCSLDLDSEMPGPA 444
           ASL++ +++S S  PR       L   +  G L   +LD D E P PA
Sbjct: 491 ASLDVANIISGSGRPRRRTAWNPLGEAAPPGELYRRTLDSDEERPRPA 538


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 346   PVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVV 405
             P L   C    RV  S  +++ + D S  S P+  + P   P   PP+   A    C+ V
Sbjct: 17074 PDLLEGCQYEFRV--SAENEIGIGDPSPPSKPVFAKDPIAKPS--PPVNPEAIDTTCNSV 17129

Query: 406   SLSASPRTHEGGTKLL 421
              L+  P  H+GG+K+L
Sbjct: 17130 DLTWQPPRHDGGSKIL 17145


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 346   PVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVV 405
             P L   C    RV  S  +++ + D S  S P+  + P   P   PP+   A    C+ V
Sbjct: 10769 PDLLEGCQYEFRV--SAENEIGIGDPSPPSKPVFAKDPIAKPS--PPVNPEAIDTTCNSV 10824

Query: 406   SLSASPRTHEGGTKLL 421
              L+  P  H+GG+K+L
Sbjct: 10825 DLTWQPPRHDGGSKIL 10840


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 346   PVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVV 405
             P L   C    RV  S  +++ + D S  S P+  + P   P   PP+   A    C+ V
Sbjct: 10702 PDLLEGCQYEFRV--SAENEIGIGDPSPPSKPVFAKDPIAKPS--PPVNPEAIDTTCNSV 10757

Query: 406   SLSASPRTHEGGTKLL 421
              L+  P  H+GG+K+L
Sbjct: 10758 DLTWQPPRHDGGSKIL 10773


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 346   PVLCAACGGGGRVYHSTPSDLCVVDLSRGSTPLGPEQPEEGPGGLPPMLCPASLNICSVV 405
             P L   C    RV  S  +++ + D S  S P+  + P   P   PP+   A    C+ V
Sbjct: 10577 PDLLEGCQYEFRV--SAENEIGIGDPSPPSKPVFAKDPIAKPS--PPVNPEAIDTTCNSV 10632

Query: 406   SLSASPRTHEGGTKLL 421
              L+  P  H+GG+K+L
Sbjct: 10633 DLTWQPPRHDGGSKIL 10648


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 151  KMQLFEQPCPGED-----PRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGS 205
            K  L E   PG       P P G  GE  L+    PAG PG P  P          P G 
Sbjct: 970  KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP---------GPPGP 1020

Query: 206  RVP--HDLLGGSGG 217
             +P   D + GSGG
Sbjct: 1021 GLPAGFDDMEGSGG 1034


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 151 KMQLFEQPCPGED-----PRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGS 205
           K  L E   PG       P P G  GE  L+    PAG PG P  P          P G 
Sbjct: 555 KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP---------GPPGP 605

Query: 206 RVP--HDLLGGSGG 217
            +P   D + GSGG
Sbjct: 606 GLPAGFDDMEGSGG 619


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 151 KMQLFEQPCPGED-----PRPGGQIGEVELSSYTPPAGVPGKPAAPHFLPVLCSVSPSGS 205
           K  L E   PG       P P G  GE  L+    PAG PG P  P          P G 
Sbjct: 735 KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP---------GPPGP 785

Query: 206 RVP--HDLLGGSGG 217
            +P   D + GSGG
Sbjct: 786 GLPAGFDDMEGSGG 799


>gi|221136876 Ras association (RalGDS/AF-6) domain family
           (N-terminal) member 7 isoform 3 [Homo sapiens]
          Length = 320

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 410 SPRTHEGGTKLLALSAKGRLMTCSLDLDSEMPG---PARMTTESAGQKI-------KELL 459
           S  T E   +L AL A+ R +   L L +E PG   P    TE   Q +        E+ 
Sbjct: 197 SAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATERLHQDLAVQERQSAEVQ 256

Query: 460 SGIGNISERVSFLKKAVDQRNKALTSLNEAM---NVSCALLSSGTG----PRPISCTTST 512
             +  +S  +   ++A+  + + L  LN  +   N+   +  +G      PRP      T
Sbjct: 257 GSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTGAALPPPPRPDRGPPGT 316

Query: 513 TW 514
            W
Sbjct: 317 QW 318


>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
            [Homo sapiens]
          Length = 1212

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 374  GSTPLGPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRTHEGGTKLLALSAK-GRLMTC 432
            G+ P GPE P+ GP  L         ++        +P      + +  LS + G     
Sbjct: 984  GAGPGGPESPDAGPKAL--------YDVAEAEEHFPAPARPRSPSPISTLSHRAGSASRT 1035

Query: 433  SLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLNEAMNV 492
              D+ S    P   ++ S G  ++++ S +   +  +S L   +      L++   +  V
Sbjct: 1036 DDDVPSLHSEPVARSSSSQGSLMEQISSVVTRFTANISELNSMM------LSTAAPSPGV 1089

Query: 493  SCALLSSGTGPRPISC-TTSTTWSRLQTQDVLMAT 526
               L SS   P+ I   TT TT++ +Q    +  T
Sbjct: 1090 GAPLCSSYLIPKEIQLPTTMTTFAEIQPLPAIEVT 1124


>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
            [Homo sapiens]
          Length = 1180

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 374  GSTPLGPEQPEEGPGGLPPMLCPASLNICSVVSLSASPRTHEGGTKLLALSAK-GRLMTC 432
            G+ P GPE P+ GP  L         ++        +P      + +  LS + G     
Sbjct: 952  GAGPGGPESPDAGPKAL--------YDVAEAEEHFPAPARPRSPSPISTLSHRAGSASRT 1003

Query: 433  SLDLDSEMPGPARMTTESAGQKIKELLSGIGNISERVSFLKKAVDQRNKALTSLNEAMNV 492
              D+ S    P   ++ S G  ++++ S +   +  +S L   +      L++   +  V
Sbjct: 1004 DDDVPSLHSEPVARSSSSQGSLMEQISSVVTRFTANISELNSMM------LSTAAPSPGV 1057

Query: 493  SCALLSSGTGPRPISC-TTSTTWSRLQTQDVLMAT 526
               L SS   P+ I   TT TT++ +Q    +  T
Sbjct: 1058 GAPLCSSYLIPKEIQLPTTMTTFAEIQPLPAIEVT 1092


>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
           sapiens]
          Length = 455

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 124 ILPDAALCAFTLLDSVLVTLVQGPARWKMQLFEQPCPGEDPRPGGQIGEVELSSYTPPAG 183
           +LP        LL  + + L+    RWK +L+   C    P    + GE+E ++  P A 
Sbjct: 213 LLPLVIFFGLCLLSLLFIGLMYRYQRWKSKLYSIVCGKSTPE---KEGELEGTTTKPLAP 269

Query: 184 VPGKPAAPHFLPVLCSVSPSGSRVPHDLLGGSGGFTLED 222
            P     P F P L       S VP      S  +T  D
Sbjct: 270 NPSFSPTPGFTPTL-----GFSPVPSSTFTSSSTYTPGD 303


>gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo
           sapiens]
          Length = 426

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 476 VDQRNKALTSLNEAMNVSCALLSSGTGPRPISC-TTSTTWSRLQTQ-DVLMATCVLENSS 533
           +D     L + +  ++ SC+ L +      +SC T   + S L     +L A+C + + S
Sbjct: 177 LDASRSMLDASSSTLDASCSTLDASCSTLDVSCYTLDASCSTLDASCSILDASCSMLDIS 236

Query: 534 SFSLDQGWTLCIQVLTSSCALDLDSACSAI 563
             +LD   ++    L +SC++ LD++CS +
Sbjct: 237 CSTLDAPCSM----LDASCSM-LDASCSML 261


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,331,903
Number of Sequences: 37866
Number of extensions: 2235219
Number of successful extensions: 7315
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 7181
Number of HSP's gapped (non-prelim): 179
length of query: 881
length of database: 18,247,518
effective HSP length: 111
effective length of query: 770
effective length of database: 14,044,392
effective search space: 10814181840
effective search space used: 10814181840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.