Guide to the Human Genome
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Name: LOC100293570 Sequence: fasta or formatted (332aa) NCBI GI: 239756827
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         27           2
 C cysteine            0.9          3           2
 D aspartate           5.4         18           2
 E glutamate           6.6         22           2
 F phenylalanine       0.9          3           1
 G glycine            12.7         42           2
 H histidine           4.5         15           2
 I isoleucine          2.1          7           1
 K lysine              1.5          5           1
 L leucine            17.2         57           3
 M methionine          1.5          5           1
 N asparagine          1.5          5           1
 P proline             5.7         19           2
 Q glutamine           4.5         15           1
 R arginine            7.5         25           2
 S serine              3.0         10           1
 T threonine           5.4         18           3
 V valine              9.9         33           3
 W tryptophan          0.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291100          0.358   PREDICTED: hypothetical protein XP_002347807 
LOC100287890          0.358   PREDICTED: hypothetical protein XP_002343600 
C17orf70              0.024   Fanconi anemia core complex 100 kDa subunit isoform...
C17orf70              0.024   Fanconi anemia core complex 100 kDa subunit isoform...
CD109                 0.008   CD109 antigen isoform 3 precursor 
CD109                 0.008   CD109 antigen isoform 2 precursor 
CD109                 0.008   CD109 antigen isoform 1 precursor 
MRPL3                 0.008   mitochondrial ribosomal protein L3 
KIAA1618              0.008   hypothetical protein LOC57714 
FAM157C               0.006   PREDICTED: family with sequence similarity 157, mem...
TTF2                  0.006   transcription termination factor, RNA polymerase II ...
ZSCAN20               0.006   zinc finger protein 31 
HVCN1                 0.005   hydrogen voltage-gated channel 1 
HVCN1                 0.005   hydrogen voltage-gated channel 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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