Guide to the Human Genome
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Name: C17orf70 Sequence: fasta or formatted (881aa) NCBI GI: 157951702
Description:

Fanconi anemia core complex 100 kDa subunit isoform b

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [730aa] Fanconi anemia core complex 100 kDa subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         84           2
 C cysteine            4.3         38           2
 D aspartate           5.3         47           2
 E glutamate           5.7         50           2
 F phenylalanine       2.2         19           1
 G glycine             8.2         72           4
 H histidine           2.4         21           2
 I isoleucine          2.7         24           1
 K lysine              1.9         17           2
 L leucine            13.8        122           2
 M methionine          1.5         13           1
 N asparagine          1.4         12           1
 P proline             8.4         74           2
 Q glutamine           4.0         35           1
 R arginine            5.6         49           2
 S serine              8.5         75           3
 T threonine           5.1         45           2
 V valine              7.4         65           2
 W tryptophan          0.7          6           1
 Y tyrosine            1.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fanconi anemia core complex 100 kDa subunit isoform... 
C17orf70              0.823   Fanconi anemia core complex 100 kDa subunit isoform...
LOC100293570          0.009   PREDICTED: hypothetical protein 
SPEG                  0.006   SPEG complex locus 
AGRN                  0.006   agrin 
AHNAK2                0.006   AHNAK nucleoprotein 2 
OGFR                  0.005   opioid growth factor receptor 
ZNF628                0.005   zinc finger protein 628 
COL13A1               0.005   alpha 1 type XIII collagen isoform 16 
COL13A1               0.005   alpha 1 type XIII collagen isoform 11 
COL13A1               0.005   alpha 1 type XIII collagen isoform 4 
TRAF1                 0.004   TNF receptor-associated factor 1 
FYCO1                 0.004   FYVE and coiled-coil domain containing 1 
KCNC3                 0.004   Shaw-related voltage-gated potassium channel protein...
PLEKHA4               0.004   pleckstrin homology domain containing family A memb...
LOC100288439          0.004   PREDICTED: hypothetical protein 
LOC100288439          0.004   PREDICTED: hypothetical protein XP_002343141 
HIRIP3                0.004   HIRA interacting protein 3 
TTN                   0.003   titin isoform N2-A 
TTN                   0.003   titin isoform novex-2 
TTN                   0.003   titin isoform novex-1 
TTN                   0.003   titin isoform N2-B 
COL18A1               0.003   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.003   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.003   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
RASSF7                0.003   Ras association (RalGDS/AF-6) domain family (N-term...
GRM5                  0.003   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.003   glutamate receptor, metabotropic 5 isoform b precurso...
TNFRSF1A              0.003   tumor necrosis factor receptor 1 precursor 
LOC100289830          0.003   PREDICTED: hypothetical protein XP_002347519 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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