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Search of human proteins with 157820127
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157820127 claudin-like [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157820127 claudin-like [Homo sapiens] 472 e-133
gi|162417973 claudin 22 [Homo sapiens] 230 7e-61
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens] 229 1e-60
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 228 4e-60
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 228 4e-60
gi|11141861 claudin 9 [Homo sapiens] 111 4e-25
gi|10863887 claudin 1 [Homo sapiens] 111 6e-25
gi|153792768 claudin 6 [Homo sapiens] 110 1e-24
gi|153792186 claudin 7 [Homo sapiens] 104 5e-23
gi|195947374 claudin 5 [Homo sapiens] 103 9e-23
gi|195947372 claudin 5 [Homo sapiens] 103 9e-23
gi|4502875 claudin 3 [Homo sapiens] 103 2e-22
gi|40788011 claudin 8 [Homo sapiens] 100 8e-22
gi|183979973 claudin 19 isoform a [Homo sapiens] 100 8e-22
gi|183979975 claudin 19 isoform b [Homo sapiens] 100 8e-22
gi|4502877 claudin 4 [Homo sapiens] 100 1e-21
gi|225703142 claudin 14 [Homo sapiens] 98 7e-21
gi|21536294 claudin 14 [Homo sapiens] 98 7e-21
gi|225703138 claudin 14 [Homo sapiens] 98 7e-21
gi|6912314 claudin 14 [Homo sapiens] 98 7e-21
gi|225703140 claudin 14 [Homo sapiens] 98 7e-21
gi|6912316 claudin 17 [Homo sapiens] 97 1e-20
gi|9966781 claudin 2 [Homo sapiens] 92 4e-19
gi|7656981 claudin 15 [Homo sapiens] 89 4e-18
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 82 4e-16
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 81 8e-16
gi|5921465 claudin 10 isoform b [Homo sapiens] 70 1e-12
gi|47716519 claudin 20 [Homo sapiens] 67 1e-11
gi|33598916 claudin 10 isoform a [Homo sapiens] 56 3e-08
gi|124107616 claudin 23 [Homo sapiens] 54 9e-08
>gi|157820127 claudin-like [Homo sapiens]
Length = 229
Score = 472 bits (1214), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV
Sbjct: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
Query: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL
Sbjct: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
Query: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG
Sbjct: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
Query: 181 LLLIFSACLGKEDVPFPLMAGPTVPLSCAPVEESDGSFHLMLRPRNLVI 229
LLLIFSACLGKEDVPFPLMAGPTVPLSCAPVEESDGSFHLMLRPRNLVI
Sbjct: 181 LLLIFSACLGKEDVPFPLMAGPTVPLSCAPVEESDGSFHLMLRPRNLVI 229
>gi|162417973 claudin 22 [Homo sapiens]
Length = 220
Score = 230 bits (587), Expect = 7e-61
Identities = 108/188 (57%), Positives = 136/188 (72%)
Query: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
MA FR QL G+ LSLLGWV SC+T LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MALVFRTVAQLAGVSLSLLGWVLSCLTNYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 LLLIFSAC 188
LL +AC
Sbjct: 181 CLLHCAAC 188
>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 229 bits (584), Expect = 1e-60
Identities = 108/188 (57%), Positives = 137/188 (72%)
Query: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
MA FR +Q GLLLSLLGW+ S +TT LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MALIFRTAMQSVGLLLSLLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 LLLIFSAC 188
LL +AC
Sbjct: 181 CLLNCAAC 188
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 228 bits (580), Expect = 4e-60
Identities = 107/188 (56%), Positives = 136/188 (72%)
Query: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
MA FR +Q GLLLS LGW+ S +TT LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 LLLIFSAC 188
LL +AC
Sbjct: 181 CLLNCAAC 188
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 228 bits (580), Expect = 4e-60
Identities = 107/188 (56%), Positives = 136/188 (72%)
Query: 1 MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEV 60
MA FR +Q GLLLS LGW+ S +TT LP WK LNL+LNEME W MG+W+ CV +EEV
Sbjct: 1 MALIFRTAMQSVGLLLSFLGWILSIITTYLPHWKNLNLDLNEMENWTMGLWQTCVIQEEV 60
Query: 61 ATVCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGL 120
CK F+SFL+LP EL+V+RILM S+GLG LGLL+ FG +C + + KRRL +
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 121 LGRTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGG 180
LG L ++ T L+PVSWVAH T+Q+FWD+++PD +PRWEFG AL+LGW AG+ L LGG
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 181 LLLIFSAC 188
LL +AC
Sbjct: 181 CLLNCAAC 188
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 111 bits (278), Expect = 4e-25
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMET----WIMGIWEVCVDREEVATVC 64
++L G+ L++LGW+ + V+ LP WK N + W G+W CV + C
Sbjct: 6 LELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVW-EGLWMSCVVQSTGQMQC 64
Query: 65 KAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRT 124
K ++S L+LPQ+LQ AR L V + L LLGLL+ G++C K R+ L
Sbjct: 65 KVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGA-KARIVLTAGV 123
Query: 125 LEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
+ A L+PV W AHA IQDF++ + + + R E G +LYLGWAA L LGG LL
Sbjct: 124 ILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKR-ELGASLYLGWAAAALLMLGGGLL 181
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 111 bits (277), Expect = 6e-25
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 4/194 (2%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMET---WIMGIWEVCVDREEVATV 63
A +QL G +L+ LGW+ + V+T LPQW+ + + + T G+W CV +
Sbjct: 4 AGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQ 63
Query: 64 CKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGR 123
CK F+S L+L LQ R LMV LG++ + + + G +C + V K R+ ++G
Sbjct: 64 CKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGG 123
Query: 124 TLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
+ A L+ +W + +Q+F+D P + R+EFG AL+ GWAA LGG LL
Sbjct: 124 AIFLLAGLAILVATAWYGNRIVQEFYDPMTP-VNARYEFGQALFTGWAAASLCLLGGALL 182
Query: 184 IFSACLGKEDVPFP 197
S P P
Sbjct: 183 CCSCPRKTTSYPTP 196
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 110 bits (275), Expect = 1e-24
Identities = 74/198 (37%), Positives = 103/198 (52%), Gaps = 7/198 (3%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMET----WIMGIWEVCVDREEVAT 62
A +Q+ G++L+LLGWV V+ LP WK N + W G+W CV +
Sbjct: 4 AGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVW-EGLWMSCVVQSTGQM 62
Query: 63 VCKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLG 122
CK ++S L+LPQ+LQ AR L V + + L GLL+ G++C + K RL L
Sbjct: 63 QCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEK-DSKARLVLTS 121
Query: 123 RTLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLL 182
+ + TL+PV W AHA I+DF++ + + R E G +LYLGWAA L LGG L
Sbjct: 122 GIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKR-ELGASLYLGWAASGLLLLGGGL 180
Query: 183 LIFSACLGKEDVPFPLMA 200
L + G P MA
Sbjct: 181 LCCTCPSGGSQGPSHYMA 198
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 104 bits (260), Expect = 5e-23
Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 10/202 (4%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMET---WIMGIWEVCVDREEVATVCK 65
+QL G ++LLGWV T +PQW+ + + + T G+W CV + CK
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+L LQ R LMV S LG L + + + G +C + V K R+ + G +
Sbjct: 66 MYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGII 125
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A L+ SW H + DF++ IP I ++EFG A+++GWA + LGG LL
Sbjct: 126 FIVAGLAALVACSWYGHQIVTDFYNPLIPTNI-KYEFGPAIFIGWAGSALVILGGALLSC 184
Query: 186 SACLGKEDVPFPLMAGPTVPLS 207
S C G E AG VP S
Sbjct: 185 S-CPGNES-----KAGYRVPRS 200
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 103 bits (258), Expect = 9e-23
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 7/197 (3%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKT---LNLELNEMETWIMGIWEVCVDREEVATV 63
A +++ GL+L L+GW + LP W+ L+ + +T G+W CV +
Sbjct: 89 AALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQ 148
Query: 64 CKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGR 123
CK ++S L+L E+Q AR L V++ L + L + G++C K R+ L G
Sbjct: 149 CKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGG 207
Query: 124 TLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
L L+P+ W A+ +++F+D S+P + ++E G ALY+GWAA L +GG LL
Sbjct: 208 VLYLFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLL 266
Query: 184 IFSA--CLGKEDVPFPL 198
A C G+ D+ FP+
Sbjct: 267 CCGAWVCTGRPDLSFPV 283
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 103 bits (258), Expect = 9e-23
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 7/197 (3%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKT---LNLELNEMETWIMGIWEVCVDREEVATV 63
A +++ GL+L L+GW + LP W+ L+ + +T G+W CV +
Sbjct: 89 AALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQ 148
Query: 64 CKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGR 123
CK ++S L+L E+Q AR L V++ L + L + G++C K R+ L G
Sbjct: 149 CKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTC-VAPGPAKARVALTGG 207
Query: 124 TLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
L L+P+ W A+ +++F+D S+P + ++E G ALY+GWAA L +GG LL
Sbjct: 208 VLYLFCGLLALVPLCWFANIVVREFYDPSVP-VSQKYELGAALYIGWAATALLMVGGCLL 266
Query: 184 IFSA--CLGKEDVPFPL 198
A C G+ D+ FP+
Sbjct: 267 CCGAWVCTGRPDLSFPV 283
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 103 bits (256), Expect = 2e-22
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKT---LNLELNEMETWIMGIWEVCVDREEVATVCK 65
+++ G L++LGW+ + V LP W+ + + + G+W CV + CK
Sbjct: 5 LEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQMQCK 64
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+LPQ+LQ AR L+V + L GLL+ G++C + K ++ ++ L
Sbjct: 65 VYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDD-TAKAKITIVAGVL 123
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A+ TL+PVSW A+ I+DF++ +P+ R E G LY+GWAA LGG LL
Sbjct: 124 FLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKR-EMGAGLYVGWAAAALQLLGGALLCC 182
Query: 186 S 186
S
Sbjct: 183 S 183
>gi|40788011 claudin 8 [Homo sapiens]
Length = 225
Score = 100 bits (250), Expect = 8e-22
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 4/187 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEM---ETWIMGIWEVCVDREEVATVCK 65
+++ GL L +G V + T++PQW+ N + E + G+W CV + + CK
Sbjct: 6 LEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+L +LQ AR LM A+ + L ++ G +C + K + L +
Sbjct: 66 IYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGII 125
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
L+PVSWVA+A I+DF+ +SI ++ + E G ALYLGW + L +GG L
Sbjct: 126 FIITGMVVLIPVSWVANAIIRDFY-NSIVNVAQKRELGEALYLGWTTALVLIVGGALFCC 184
Query: 186 SACLGKE 192
C ++
Sbjct: 185 VFCCNEK 191
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 100 bits (250), Expect = 8e-22
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 4/178 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWI---MGIWEVCVDREEVATVCK 65
+QL G L+L GWV +T LPQWK + + + T + G+W C + CK
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+L +Q AR LMV + LG + ++L G +C + + K R+ + G L
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGAL 125
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
A TL VSW A Q+F++ S P + R+EFG AL++GWA+ LGG L
Sbjct: 126 FILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFL 182
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 100 bits (250), Expect = 8e-22
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 4/178 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWI---MGIWEVCVDREEVATVCK 65
+QL G L+L GWV +T LPQWK + + + T + G+W C + CK
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+L +Q AR LMV + LG + ++L G +C + + K R+ + G L
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGAL 125
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
A TL VSW A Q+F++ S P + R+EFG AL++GWA+ LGG L
Sbjct: 126 FILAGLCTLTAVSWYATLVTQEFFNPSTP-VNARYEFGPALFVGWASAGLAVLGGSFL 182
>gi|4502877 claudin 4 [Homo sapiens]
Length = 209
Score = 100 bits (249), Expect = 1e-21
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 6/191 (3%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKT---LNLELNEMETWIMGIWEVCVDREEVATVCK 65
+Q+ G+ L++LGW+ + LP W+ + + +T G+W CV + CK
Sbjct: 6 LQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
++S L+LPQ+LQ AR L++ S + LG+LL G +C K + ++ +
Sbjct: 66 VYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESA-KAKTMIVAGVV 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++PVSW AH IQDF++ + R E G +LY+GWAA L LGG LL
Sbjct: 125 FLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKR-EMGASLYVGWAASGLLLLGGGLLCC 183
Query: 186 SACLGKEDVPF 196
+ C + D P+
Sbjct: 184 N-CPPRTDKPY 193
>gi|225703142 claudin 14 [Homo sapiens]
Length = 239
Score = 97.8 bits (242), Expect = 7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWK-TLNLELNEME--TWIMGIWEVCVDREEVATVCK 65
VQL G LLS LG V + +TTILP W+ T ++ N + +++ G+W CV C+
Sbjct: 6 VQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQ 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LPQ+LQ AR LMV S L + G +C + + K +LG TL
Sbjct: 66 IYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAK-GTPAKTTFAILGGTL 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++ VSW + +Q+F++ +P + ++E G ALYLG+ + +GG LL
Sbjct: 125 FILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLLCL 183
Query: 186 SACLGKEDVPF-PLMAGP---TVPLSCAPVEESDGSF 218
S +++ P+ P A P T + AP + ++
Sbjct: 184 SC---QDEAPYRPYQAPPRATTTTANTAPAYQPPAAY 217
>gi|21536294 claudin 14 [Homo sapiens]
Length = 239
Score = 97.8 bits (242), Expect = 7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWK-TLNLELNEME--TWIMGIWEVCVDREEVATVCK 65
VQL G LLS LG V + +TTILP W+ T ++ N + +++ G+W CV C+
Sbjct: 6 VQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQ 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LPQ+LQ AR LMV S L + G +C + + K +LG TL
Sbjct: 66 IYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAK-GTPAKTTFAILGGTL 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++ VSW + +Q+F++ +P + ++E G ALYLG+ + +GG LL
Sbjct: 125 FILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLLCL 183
Query: 186 SACLGKEDVPF-PLMAGP---TVPLSCAPVEESDGSF 218
S +++ P+ P A P T + AP + ++
Sbjct: 184 SC---QDEAPYRPYQAPPRATTTTANTAPAYQPPAAY 217
>gi|225703138 claudin 14 [Homo sapiens]
Length = 239
Score = 97.8 bits (242), Expect = 7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWK-TLNLELNEME--TWIMGIWEVCVDREEVATVCK 65
VQL G LLS LG V + +TTILP W+ T ++ N + +++ G+W CV C+
Sbjct: 6 VQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQ 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LPQ+LQ AR LMV S L + G +C + + K +LG TL
Sbjct: 66 IYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAK-GTPAKTTFAILGGTL 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++ VSW + +Q+F++ +P + ++E G ALYLG+ + +GG LL
Sbjct: 125 FILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLLCL 183
Query: 186 SACLGKEDVPF-PLMAGP---TVPLSCAPVEESDGSF 218
S +++ P+ P A P T + AP + ++
Sbjct: 184 SC---QDEAPYRPYQAPPRATTTTANTAPAYQPPAAY 217
>gi|6912314 claudin 14 [Homo sapiens]
Length = 239
Score = 97.8 bits (242), Expect = 7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWK-TLNLELNEME--TWIMGIWEVCVDREEVATVCK 65
VQL G LLS LG V + +TTILP W+ T ++ N + +++ G+W CV C+
Sbjct: 6 VQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQ 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LPQ+LQ AR LMV S L + G +C + + K +LG TL
Sbjct: 66 IYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAK-GTPAKTTFAILGGTL 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++ VSW + +Q+F++ +P + ++E G ALYLG+ + +GG LL
Sbjct: 125 FILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLLCL 183
Query: 186 SACLGKEDVPF-PLMAGP---TVPLSCAPVEESDGSF 218
S +++ P+ P A P T + AP + ++
Sbjct: 184 SC---QDEAPYRPYQAPPRATTTTANTAPAYQPPAAY 217
>gi|225703140 claudin 14 [Homo sapiens]
Length = 239
Score = 97.8 bits (242), Expect = 7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWK-TLNLELNEME--TWIMGIWEVCVDREEVATVCK 65
VQL G LLS LG V + +TTILP W+ T ++ N + +++ G+W CV C+
Sbjct: 6 VQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQ 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LPQ+LQ AR LMV S L + G +C + + K +LG TL
Sbjct: 66 IYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAK-GTPAKTTFAILGGTL 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
A ++ VSW + +Q+F++ +P + ++E G ALYLG+ + +GG LL
Sbjct: 125 FILAGLLCMVAVSWTTNDVVQNFYNPLLPSGM-KFEIGQALYLGFISSSLSLIGGTLLCL 183
Query: 186 SACLGKEDVPF-PLMAGP---TVPLSCAPVEESDGSF 218
S +++ P+ P A P T + AP + ++
Sbjct: 184 SC---QDEAPYRPYQAPPRATTTTANTAPAYQPPAAY 217
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 96.7 bits (239), Expect = 1e-20
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKT---LNLELNEMETWIMGIWEVCVDREEVATVCK 65
+Q+ GL+L LG V + TT+LPQW+ + + E G+W C+ + V CK
Sbjct: 6 LQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCK 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ S L+LP L+ AR LM + L L+ LL+ G + Q K L L
Sbjct: 66 FYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVL 125
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
L+PVSW A+ I+DF++ +I I + E G AL+LGWA+ L +GG LL
Sbjct: 126 FILTGIFVLIPVSWTANIIIRDFYNPAI-HIGQKRELGAALFLGWASAAVLFIGGGLLCG 184
Query: 186 SACLGKE 192
C ++
Sbjct: 185 FCCCNRK 191
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 92.0 bits (227), Expect = 4e-19
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 5/181 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWI---MGIWEVCVDREEVATVCK 65
+QL G +L LLG + + V +LP WKT + + T + G+W C T C
Sbjct: 6 LQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCD 65
Query: 66 AFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTL 125
+ + L LP ++Q A+ +MV S + L ++ G C F + K R+ + G
Sbjct: 66 IYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRA-KDRVAVAGGVF 124
Query: 126 EASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIF 185
+PV+W H ++DF+ +PD + ++E G ALYLG + +F + G++L F
Sbjct: 125 FILGGLLGFIPVAWNLHGILRDFYSPLVPDSM-KFEIGEALYLGIISSLFSLIAGIILCF 183
Query: 186 S 186
S
Sbjct: 184 S 184
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 88.6 bits (218), Expect = 4e-18
Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 5/210 (2%)
Query: 9 VQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIM--GIWEVCVDREEVATVCKA 66
V+ G ++ +G + VT W+ + N + T + +W C C
Sbjct: 5 VETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWE 64
Query: 67 FESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLE 126
F S L+L +Q R LM+ + LG LGLLL G C + K +L L
Sbjct: 65 FPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALH 124
Query: 127 ASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIFS 186
A ++ +SW A +DF+D P ++E G ALYLGW+A + LGGL L +
Sbjct: 125 ILAGICGMVAISWYAFNITRDFFDPLYPG--TKYELGPALYLGWSASLISILGGLCLCSA 182
Query: 187 ACLGKEDVPFPLMAGP-TVPLSCAPVEESD 215
C G ++ P P P+S PV SD
Sbjct: 183 CCCGSDEDPAASARRPYQAPVSVMPVATSD 212
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 82.0 bits (201), Expect = 4e-16
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Query: 13 GLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWI--MGIWEVCVDREEVATVCKAFESF 70
G ++SL+G T + QW T +L N + G+W CV T C+ + +
Sbjct: 10 GFVVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNYQGLWRSCVRESSGFTECRGYFTL 69
Query: 71 LSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLEASAS 130
L LP LQ R LM+ LG +GLL+ F +C + + K + L + +
Sbjct: 70 LGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSG 129
Query: 131 ATTLLPVSWVAHATIQDFWDDS----------IPDIIPRWEFGGALYLGWAAGIFLALGG 180
+ VS A+ + +FW + + + R+ FG AL++GW AG +GG
Sbjct: 130 LCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGG 189
Query: 181 LLLIFSACLG 190
+++ AC G
Sbjct: 190 VMMCI-ACRG 198
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 80.9 bits (198), Expect = 8e-16
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 10 QLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIM--GIWEVCVDREEVATVCKAF 67
Q+ LLS+LG T + W T +L N + + G+W CV + T C+ +
Sbjct: 7 QVVAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVRQSSGFTECRPY 66
Query: 68 ESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLEA 127
+ L LP LQ R LM+ LG +GLL+ F +C + + K + L +
Sbjct: 67 FTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFI 126
Query: 128 SASATTLLPVSWVAHATIQDFWDDS----------IPDIIPRWEFGGALYLGWAAGIFLA 177
+ + VS A+ + +FW + + + R+ FG AL++GW AG
Sbjct: 127 VSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTL 186
Query: 178 LGGLLLIFSACLG 190
+GG+++ AC G
Sbjct: 187 IGGVMMCI-ACRG 198
>gi|5921465 claudin 10 isoform b [Homo sapiens]
Length = 228
Score = 70.5 bits (171), Expect = 1e-12
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Query: 15 LLSLLGWVCSCVTTILPQWK--TLNLELNEMETWIMGIWEVCVDREEVATVCKAFESFLS 72
++S+ GWV T WK T++ + T+ +W+ CV + CK F S L+
Sbjct: 12 MVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDFPSMLA 71
Query: 73 LPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLEASASAT 132
L +Q R LM+A+ LG G + FG +C + K ++ L + +
Sbjct: 72 LDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGIVFILSGLC 130
Query: 133 TLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIFS 186
++ S A+ +F+D + ++E G AL++GWA +GG++ FS
Sbjct: 131 SMTGCSLYANKITTEFFDPLF--VEQKYELGAALFIGWAGASLCIIGGVIFCFS 182
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 67.0 bits (162), Expect = 1e-11
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKT-LNLELNEMETWIM--GIWEVCVDREEVATV 63
A +QL +L+L G T+LP WK ++++ N + + G+W C
Sbjct: 4 AGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFS 63
Query: 64 CKAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGR 123
C S LSLP +Q AR MV + L LG+ + G +C + R K G
Sbjct: 64 CALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRET-KSHASFAGG 122
Query: 124 TLEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLL 183
SA ++L+ W I +F D ++P+ + E GGA+Y+G+ + + L + G++
Sbjct: 123 VCFMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISGMIF 181
Query: 184 IFS 186
S
Sbjct: 182 CTS 184
>gi|33598916 claudin 10 isoform a [Homo sapiens]
Length = 226
Score = 55.8 bits (133), Expect = 3e-08
Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 5/182 (2%)
Query: 7 AKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEME-TWI-MGIWEVCVDREEVATVC 64
++ Q+ L+ + G+ T +WK + + TW+ G+W C + C
Sbjct: 2 SRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHC 61
Query: 65 KAFESFLSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRT 124
+ + + +Q R LM+A+ LG G + FG +C + K ++ L
Sbjct: 62 RPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGI 120
Query: 125 LEASASATTLLPVSWVAHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLI 184
+ + ++ S A+ +F+D + ++E G AL++GWA +GG++
Sbjct: 121 VFILSGLCSMTGCSLYANKITTEFFDPLF--VEQKYELGAALFIGWAGASLCIIGGVIFC 178
Query: 185 FS 186
FS
Sbjct: 179 FS 180
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 54.3 bits (129), Expect = 9e-08
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 13 GLLLSLLGWVCSCVTTILPQWKTLNLELNE---METWIMGIWEVCVDREEVATVCKAFES 69
G++L+ G + + T+ P W+ + LN+ +E + G+W++C ++ C +
Sbjct: 10 GMVLAPCGLLLNLTGTLAPGWRLVKGFLNQPVDVELY-QGLWDMCREQSSRERECGQTDQ 68
Query: 70 FLSLP-QELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLEAS 128
+ Q + VAR LMV S +LGLLL S G C+Q +V GL G L
Sbjct: 69 WGYFEAQPVLVARALMVTSLAATVLGLLLASLGVRCWQ-DEPNFVL---AGLSGVVLFV- 123
Query: 129 ASATTLLPVSWVAHATIQDFWDDSIPDIIP------RWEFGGALYLGWAAGIFLALGGLL 182
A L+PVSW H F D D++P + +L LG+ L LGG
Sbjct: 124 AGLLGLIPVSWYNH-----FLGDR--DVLPAPASPVTVQVSYSLVLGYLGSCLLLLGGFS 176
Query: 183 LIFS 186
L S
Sbjct: 177 LALS 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,130,847
Number of Sequences: 37866
Number of extensions: 382551
Number of successful extensions: 1124
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 44
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.